View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_52 (Length: 399)
Name: NF17763_high_52
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 26135798 - 26135434
Alignment:
| Q |
10 |
catcatcaacaatgtaatgaaattcttagaaaccgagatacataaaattcaatgaggatcaaaaagtttttgtttcttaaaaattcctatatatttcaac |
109 |
Q |
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| T |
26135798 |
catcatcaacaatgtaatgaaattcttagaaaccgagatacataaaattcaacgaggatcaaaaagtttttgtttcttaaaaattcctatatatttcaac |
26135699 |
T |
|
| Q |
110 |
atatgcacaagatagaaaacaccagagaatatagacaataagatgcattattgatacaacatgatgtattattaatagcagttaaaaccaacaaagtcac |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26135698 |
atatgcacaagatagaaagcaccagagaatatagacaataagatgcattattgatacaacatgatgtattattaataggtgttaaaaccaacaaagtc-- |
26135601 |
T |
|
| Q |
210 |
cataaatactagctattgctatgtgattgtactttgtgacaatagaaaaagcataacagaaccataatcatttttctgtgttctgaaccttgcttacaag |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26135600 |
-----atactagctattgctatgtgattgtactttgtgacaatagaaaaagcataacagaaccataatcatttttctgtgttctgaaccttgcttacaag |
26135506 |
T |
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| Q |
310 |
aagtctaacaccatattttggcattaacaccattttatacacaggacaatggcgatagtttggtgaaacatc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26135505 |
aagtctaacaccatattttggcattaacaccattttatacacaggacaatggcgatagtttggtgaaacatc |
26135434 |
T |
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