View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_58 (Length: 385)
Name: NF17763_high_58
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 48019909 - 48020104
Alignment:
| Q |
14 |
agacagacctgacgaggattaaggaatacactcattctggaagagaatgccacagaaatagctggaataatgaaagcaaaagatgctcctataaccactg |
113 |
Q |
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| T |
48019909 |
agacagacctgacgaggattaaggaatacactcattctggaagagaatgccacagaaatagctggaataatgaaagcaaaagatgctcctataaccactg |
48020008 |
T |
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| Q |
114 |
ggagcctagttccaagccatgtctgcaacagagtgttgattccagcaacaaaaagcagtgtttgaatcatttcagctttttccacctacagttttc |
209 |
Q |
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| T |
48020009 |
ggagcctagttccaagccatgtctgcaacagagtgttgattccagcaacaaaaagcagtgtttgaatcatttcagctttttccacctacagttttc |
48020104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 48020198 - 48020262
Alignment:
| Q |
304 |
ttgatgattacattgccaccacccatcaaaggaacaagaatagtggaaacaatgacaatggttcc |
368 |
Q |
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| T |
48020198 |
ttgatgattacattgccaccacccatcaaaggaacaagaatagtggaaacaatgacaatggttcc |
48020262 |
T |
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