View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_61 (Length: 378)
Name: NF17763_high_61
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_61 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 55202196 - 55202560
Alignment:
| Q |
1 |
aataacttgctgaacaagaaagcctgggatcaatctaaaaatgaagaaacagaattatctccatctaactttcaccaagaatttatttagcttgatccaa |
100 |
Q |
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| T |
55202196 |
aataacttgctgaacaagaaagcctgggatcaatctataaatgaagaatcagaattatctccatctaactttcaccaagaatttatttagcttgatccaa |
55202295 |
T |
|
| Q |
101 |
ttgagtgagtgtaagctcaatacaatcttcaatgcactgtgttctaacaagtaataactcctttcaagaaaaag--aagnnnnnnnnnngagtgatagct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
55202296 |
ttgagtgagtgtaagctcaatacaatcttcaatgcactgtgttctaacaagtaataactcctttcaagaaaaagaaaaaaaaaaaaaaagagtgatagct |
55202395 |
T |
|
| Q |
199 |
acttaactaatgttcctataaagctcaccaaatttcaaatatgcatgcaataatgttatttaactagacaaagtgcaatgattttgtttgtgagacagaa |
298 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55202396 |
acttaactattgttcctataaagctcaccaaatttcaaatatgcatgcaataatgttatttaactagacaaagtgcaatgattttgtttgtgtgacagaa |
55202495 |
T |
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| Q |
299 |
taaatagcctccaccagcatcttcctatacttcttcttttgatgctccccactcttagttttaac |
363 |
Q |
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| T |
55202496 |
tgaatagcctccaccagcatcttcctatacttcttcttcagatgctccccagtcttagttttaac |
55202560 |
T |
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