View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_7 (Length: 663)
Name: NF17763_high_7
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 3356631 - 3356433
Alignment:
| Q |
18 |
actccttgtgttggaagactgtttcagtttgctaatatatttcactttgtcatgttaagaagnnnnnnnntctcattataatagaaacaatttctctaca |
117 |
Q |
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| T |
3356631 |
actccttgtgttggaagactgtttcagtttgctaatatatttcactttgtcatgttaagaagaaaaaaaatctcattataatagaaacaatttctctaca |
3356532 |
T |
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| Q |
118 |
ataaagaaaatataactcaaatctttatttcattgtgatatgctccaatnnnnnnnttaacgaactaagcacaatcaaaagcgggaagacaaagatgtt |
216 |
Q |
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| T |
3356531 |
ataaagaaaatataactcaaatctttatttcattgtgatatgctccaataaaaaaattaacgaactaagcacaatcaaaagtgggaagacaaagatgtt |
3356433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 637
Target Start/End: Complemental strand, 5409066 - 5408997
Alignment:
| Q |
568 |
ttttaatttcatatgtcaaacactgttaaatatttatattgcactcatttcggattatatgtgcttatat |
637 |
Q |
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| T |
5409066 |
tttttattttatatttaaaacactgttaaatatttgtattgcattcattgcagattttatgtgtttatat |
5408997 |
T |
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