View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_71 (Length: 342)
Name: NF17763_high_71
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 33801391 - 33801677
Alignment:
| Q |
1 |
gcgcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgattcatcattgcaaggagaggcaatacctggtttacaactaggaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
33801391 |
gcgcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgattcatcatcgcaaggagaggcaaaacctggtttacaactaggaag |
33801490 |
T |
|
| Q |
101 |
aagaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||| ||| |
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| T |
33801491 |
aagaacaagaggacagctacacatacggttgtttgagcatattccgtagggatcacaaggttctggtgtaccacaaggatctcttggtattcttagtgaa |
33801590 |
T |
|
| Q |
201 |
gaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagcttgcatttata |
287 |
Q |
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| ||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||| ||||||| |||| |
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| T |
33801591 |
gcatcactgtttgatccagtaccgttgagattcgagaaagtaatgacaccgtcttttcctaaaactgcaatccaacttgcatgtata |
33801677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 31028117 - 31027791
Alignment:
| Q |
1 |
gcgcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgatt---catcattgcaaggagaggcaatacctggtttacaactagg |
97 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||| | ||| ||||||||| |||||| ||||||||| ||| |||||||||||||||||| |
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| T |
31028117 |
gcgcaaagtagccaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactagg |
31028018 |
T |
|
| Q |
98 |
aagaagaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgtt |
197 |
Q |
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|||||||||| |||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31028017 |
aagaagaacatgaggacagctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgtt |
31027918 |
T |
|
| Q |
198 |
gaggaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatcaa |
297 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||| ||||||| ||| ||||| |
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| T |
31027917 |
gaagaatcaccgtttgatccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcag |
31027818 |
T |
|
| Q |
298 |
cagagaaaatgaattgctataacaaag |
324 |
Q |
| |
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||||||||||||||||| ||||||||| |
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| T |
31027817 |
cagagaaaatgaattgccataacaaag |
31027791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 33805860 - 33806187
Alignment:
| Q |
3 |
gcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgattcatcattg---caaggagaggcaatacctggtttacaactaggaa |
99 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| ||| ||| ||||| ||||| ||||| ||| ||| |||||||||||||||| || |
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| T |
33805860 |
gcaaagtaactaagtccatcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggtttacaactacgat |
33805959 |
T |
|
| Q |
100 |
ga---agaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgt |
196 |
Q |
| |
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|| |||||| ||||||||||||| ||||||| |||| || || |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33805960 |
gatgaagaacagaaggacagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgt |
33806059 |
T |
|
| Q |
197 |
tgaggaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33806060 |
tgaggaatcaccatttgatccaccaccgttgagattagagaaaataatgacaccatcttttcccaaaactgcaatccagcttgcatttatacctgcatca |
33806159 |
T |
|
| Q |
297 |
acagagaaaatgaattgctataacaaag |
324 |
Q |
| |
|
|||||||||||||||| | ||||||||| |
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|
| T |
33806160 |
acagagaaaatgaatttccataacaaag |
33806187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 33812444 - 33812117
Alignment:
| Q |
3 |
gcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgattcatcattg---caaggagaggcaatacctggtttacaactaggaa |
99 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| ||| ||| ||||| ||||| ||||| ||| ||| |||||||||||||||| || |
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| T |
33812444 |
gcaaagtaactaagtccatcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggtttacaactacgat |
33812345 |
T |
|
| Q |
100 |
ga---agaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgt |
196 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||| |||| || || |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33812344 |
gatgaagaacagaaggacagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgt |
33812245 |
T |
|
| Q |
197 |
tgaggaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33812244 |
tgaggaatcaccatttgatccaccaccgttgagattagagaaaataatgacaccatcttttcccaaaactgcaatccagcttgcatttatacctgcatca |
33812145 |
T |
|
| Q |
297 |
acagagaaaatgaattgctataacaaag |
324 |
Q |
| |
|
|||||||||||||||| | ||||||||| |
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| T |
33812144 |
acagagaaaatgaatttccataacaaag |
33812117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 49463076 - 49462758
Alignment:
| Q |
3 |
gcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgattcatcattgcaaggagaggcaatacctggtttacaactaggaagaa |
102 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||| | ||| ||| ||||| ||||| |||||||| || ||| ||||||||| |||||| || |
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|
| T |
49463076 |
gcaaagtaaccaagtccgtcatcacctttcaaaaattggatagagttttctgatttatcatcacaaggagaaaaaaaaccaggtttacaattaggaataa |
49462977 |
T |
|
| Q |
103 |
gaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgagga |
202 |
Q |
| |
|
| | |||||||||||| | |||||||| | |||||| || || ||||| || || || ||||| ||||| |||||||||||| || || || || |
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|
| T |
49462976 |
tagaa---ggacagctacaccttcggttgttcgtgcatatgctataaggatcgcatggctccggtgtcccacaaggatcttgtggtatcctagtcgaaga |
49462880 |
T |
|
| Q |
203 |
atcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagcttgcatttatacctgcatcaacagag |
302 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| |||||||| |||||||||| |||| ||| ||||||||| |||| ||||| ||||| |
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| T |
49462879 |
atcaccattcgacccaccactgttgagattagagaaagtaataacaccatcccttcccaaaacagcaatccaagttgcatttacacctacatcatcagag |
49462780 |
T |
|
| Q |
303 |
aaaatgaattgctataacaaag |
324 |
Q |
| |
|
|||||||||||| | ||||||| |
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|
| T |
49462779 |
aaaatgaattgccacaacaaag |
49462758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 324
Target Start/End: Original strand, 10071050 - 10071195
Alignment:
| Q |
179 |
atcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaatgacaccatcttttcccaaaactgcaagccagctt |
278 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||| | |||||| |||| |||||||||| ||| || |
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| T |
10071050 |
atcttgtggtattcttgttgatgaatcactgtttattccaccattgttgagagtagagaaagtaataaaaccatcccttccgaaaactgcaatccaagtt |
10071149 |
T |
|
| Q |
279 |
gcatttatacctgcatcaacagagaaaatgaattgctataacaaag |
324 |
Q |
| |
|
|| || | || ||||||| || ||||| | |||||| | ||||||| |
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|
| T |
10071150 |
gctttcacacatgcatcagcatagaaagtaaattgcaacaacaaag |
10071195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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