View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_75 (Length: 334)
Name: NF17763_high_75
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 25181619 - 25181317
Alignment:
| Q |
17 |
atactaaattattgcagttcgaatcgcaa-catctatttatttaccgttaatttctaacgaatatgttacttgnnnnnnnnnttaattaatcaatttaag |
115 |
Q |
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| T |
25181619 |
atactaaattattgtagttcgaattgcaaacatctatttatttaccgtaaatttctaacgaatatgttacttgaaaaaaaaattaattaatcaatttaag |
25181520 |
T |
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| Q |
116 |
ttagggagtccaattaaataacgagtcatagatattatcnnnnnnn-taatgactcatacaatacaaggaaccgcgtgttgaaatttaatttgactagaa |
214 |
Q |
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| T |
25181519 |
ttagggagtccaattaaataacgagtcatagatattatcaaaaaaaataatgactcatacaatacaaggaaccgcgtgttgaaatttaatttgactagaa |
25181420 |
T |
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| Q |
215 |
aaatgtgcaatagaagcctgccaccaaaaaattttctttcttatataagaagcaacgctcgcttgcattgtttacctaacccagaaaagcaattataaaa |
314 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25181419 |
aaatgtgcaatagaagcctgccacc-aaaatttttctttcttatataagaagcaacgctcgcttgcattgtttacctaacccacaaaagcaattataaaa |
25181321 |
T |
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| Q |
315 |
taag |
318 |
Q |
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|||| |
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| T |
25181320 |
taag |
25181317 |
T |
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