View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_78 (Length: 324)

Name: NF17763_high_78
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_78
NF17763_high_78
[»] chr1 (1 HSPs)
chr1 (12-294)||(18064921-18065209)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 18065209 - 18064921
Alignment:
Q  12 catcatcatcgggttgttgttcgtaagtgcgataggttgattcgagtaattcgagttcttcggagagaggaacgtccatttccatgtccatgtccatatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  18065209 catcatcatcgggttgttgttcgtaagtgcgataggttgattcgagtaattcgagttcttcggggagaggaacgtccatttccatgtccatgtccatgtc 18065110  T
Q  112 catg------acatcgaaatcatccattgtagaggattgaaggatgggtttgagtgagatggtaaagtttgaatgtgtttgtttgatgtgagaagggaag 205  Q
    ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  18065109 catgtccatgacatcgaaatcatccattgtagaggattgaaggatgggtttgagtgagatggtagagtttgaatgtgtttgtttgatgtgaaaagggaag 18065010  T
Q  206 agaactgaggtcaggtttgtaaggagggaaaatagaagctgctggaaatattttggcgggaaacggataaaattacattactaaataga 294  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18065009 agaagtgaggtcaggtttgtaaggagggaaaatagaagctgctggaaatattttggcgggaaacggataaaattacattactaaataga 18064921  T

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