View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_84 (Length: 307)

Name: NF17763_high_84
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_84
NF17763_high_84
[»] chr1 (1 HSPs)
chr1 (1-297)||(7228607-7228900)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7228607 - 7228900
Alignment:
Q  1 taacatatatattcctttcttttgcagtaggattgaaaggaataggactataccctagaccgtaccgagctatatatgataaagatgataaagaagcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7228607 taacatatatattcctttcttttgcagtaggattgaaaggaataggactataccctagaccgtaccgagctatatatgataaagatgataaagaagcacc 7228706  T
Q  101 caaattgaatttgagttgatttatggcacttctatgctatgtactatcacatgcacatggatgtgtatatcatcatcatcatgtactcaaactgaaattt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||    
T  7228707 caaattgaatttgagttgatttatggcacttttatgctatgtactatcacatgcacatggatgtgtat---atcatcatcatgtacacaaactgaaattt 7228803  T
Q  201 ggtcgttatacgtctaacatgtaacgacctacttatctgttaaagcaaacgcacttcataaagaagaaagcctgaaccagaataatatatcgtggtc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7228804 ggtcgttatacgtctaacatgtaacgacctacttatctgttaaagcaaacgcacttcataaagaagaaagcctgaaccagaataatatatcgtggtc 7228900  T

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