View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_high_85 (Length: 306)
Name: NF17763_high_85
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_85 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 40192387 - 40192130
Alignment:
| Q |
18 |
gtttcaatacaatagaatagaatacaacttctttgtcaatgtctaagaacatagccatatctcaatggcaaaagtgattcaagaaacaaccaagaagatg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40192387 |
gtttcaatagaatagaatagaatacaacttctttgtcaatgtctaagaacatagccatatctcaatggcaaaagtgattcaagaaacaaccaagaagatg |
40192288 |
T |
|
| Q |
118 |
acacaactctgcaggaaaattgttcaggttgacgttaaatatggtatgcttcaaagggtatcttttgttggtcagttttttaggttcatttggaataaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40192287 |
acacaactctgcaggaaaattgttcaggttgacgttaaatatggtatgcttcaaagggtatcttttgttggtcagttttttaggttcatttggaataaac |
40192188 |
T |
|
| Q |
218 |
ttatggtttgttctgttggaagatcaccagctcaatatagaagattatctcttaatca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40192187 |
ttatggtttgttctgttggaagatcaccagctcaatatagaagattatctcttaatca |
40192130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University