View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_87 (Length: 302)
Name: NF17763_high_87
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_87 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 1046272 - 1046072
Alignment:
| Q |
18 |
aattcgtggtgtgagtagtttgtctgaagaagatattggtgcttgtccatttgcttgataaactggttagaattatatggaaaatgagaatacaatatta |
117 |
Q |
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| T |
1046272 |
aattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaactggttagaattatatggaaaatgagaatacaatatta |
1046173 |
T |
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| Q |
118 |
catgtgtataataaatgtgtagaatgcatacatgtaaatttgtaattaaactagtgaacataaatcaatatcattctgtaacaaaaattcaattccgacc |
217 |
Q |
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| T |
1046172 |
catgtgtataataaatgtgtagaatacatacatgtaaatttgtaattaaactagtgaacataaatcaatatcattctgtaacaaaaattcaattcctacc |
1046073 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
1046072 |
t |
1046072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 1046046 - 1045998
Alignment:
| Q |
245 |
tttgttagttaattgctaatttgattaaactaaatgcataccagaatta |
293 |
Q |
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| T |
1046046 |
tttgttagttaattgctaatttgattaaactaaatgcataccagaatta |
1045998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 1052932 - 1052868
Alignment:
| Q |
18 |
aattcgtggtgtgagtagtttgtctgaagaagatattggtgcttgtccatttgcttgataaactg |
82 |
Q |
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| T |
1052932 |
aatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgacaaactg |
1052868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 1071052 - 1070976
Alignment:
| Q |
37 |
ttgtctgaagaagatattggtgcttgtccatttgcttgataaactggttagaattatatggaaaatgagaatacaat |
113 |
Q |
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| T |
1071052 |
ttgtctgtagaagatattggtgcttgcccatttggctgataaactgttgagaataacatggaaaattagcatacaat |
1070976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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