View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_88 (Length: 302)
Name: NF17763_high_88
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_88 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 2149713 - 2149985
Alignment:
| Q |
13 |
aatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaagtag |
112 |
Q |
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| T |
2149713 |
aatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactcaggcaaatttctacataaagggcaagtag |
2149812 |
T |
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| Q |
113 |
cattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagaca |
212 |
Q |
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| T |
2149813 |
cattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagaca |
2149912 |
T |
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| Q |
213 |
tatggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatattgttct |
285 |
Q |
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| T |
2149913 |
tatggaacaaacattgtcaatgaattttggcaattgtccattctctgcaagttgaatctttggatattgttct |
2149985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 2145241 - 2145510
Alignment:
| Q |
15 |
tataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaagtagca |
114 |
Q |
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| T |
2145241 |
tataatgaagattgatataaaattgtagagagatgcacaaagagat-aaccaaagcacatgcatcactcaggcaaatttctacataaagggcaagtagca |
2145339 |
T |
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| Q |
115 |
ttcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagacata |
214 |
Q |
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| T |
2145340 |
ttcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatactccttaatgtctccatgggtttgtactcaccaagacata |
2145439 |
T |
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| Q |
215 |
tggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatattgttct |
285 |
Q |
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| T |
2145440 |
tggaacaaacattgtcaatggacttaggcaattgtccactctctactagttgaatctttggatattgttct |
2145510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 2140712 - 2140976
Alignment:
| Q |
19 |
atgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaagtagcattca |
118 |
Q |
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| T |
2140712 |
atgaagattgatataaa-ttgtagaaagaggcacaaagagat-aaccaaagcacgtgcatcactcaggcaaatttttacataaagggcaagtagcattca |
2140809 |
T |
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| Q |
119 |
tcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagacatatgga |
218 |
Q |
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| T |
2140810 |
tcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagacatatgga |
2140909 |
T |
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| Q |
219 |
acaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatattgttct |
285 |
Q |
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| T |
2140910 |
acaaacattgtcaatggacttaggcaattgtccactctctgctagttgaatctttggatattgttct |
2140976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 42004054 - 42003993
Alignment:
| Q |
81 |
ctctggcaaatttctacataaagggcaagtagcattcatcttgagccaaacatctatacaat |
142 |
Q |
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| T |
42004054 |
ctctggaaaatttcgacacaaagggcaggtagcatttgtcttgagccatccatctatacaat |
42003993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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