View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_90 (Length: 296)
Name: NF17763_high_90
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_90 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 12587541 - 12587811
Alignment:
| Q |
1 |
tgtttgttcactgtgagaaagaaagaaagaaaccatgattgtaaattgtggatggcgggacgtgtgttgtgttggtgtaaatcagaattgtgttagctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12587541 |
tgtttgttcactgtgagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacctgtgttgtgttggtgtaaatcagaattgtgttagctgg |
12587640 |
T |
|
| Q |
101 |
tccttgggattgggcagttgggctactgggtgggagtgtttgatattttataaattgctagcagtagtgggtggggtgttattagcagtatatgtatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12587641 |
gccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtatatg |
12587740 |
T |
|
| Q |
201 |
tatatnnnnnnnnnnntagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcccctg |
272 |
Q |
| |
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|||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
12587741 |
tata-aaaaaaaaaaatagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
12587811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 27324856 - 27324912
Alignment:
| Q |
217 |
tagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcccctgc |
273 |
Q |
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||||||| |||||||| | | |||||||||| ||||||||||||||||||||||||| |
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| T |
27324856 |
tagaaaaatttgtgcatgtaggagcccccacaatcatgtgagtggctccgcccctgc |
27324912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6900615 - 6900338
Alignment:
| Q |
1 |
tgtttgttcactgtgagaaagaaagaaagaaaccatgattgtaaattgtggatggcgggacgtgtgttgtgttggtgtaaatcagaattgtgttagctgg |
100 |
Q |
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|||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
6900615 |
tgtttgttcactgtaagaaagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaattgtgttaactgg |
6900516 |
T |
|
| Q |
101 |
tccttgggattgggcagttgggctactgggtgggagtgtttgatattttataaattgctagcagtagtgggtggggtgttattagcagtatatgtatatg |
200 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6900515 |
gccttgggattgggcagttgggctactgagtgggagtgtttgatattttagaaattgctagcaatagtgggtggggtgttattagcagtatatgtatatg |
6900416 |
T |
|
| Q |
201 |
tatat-nnnnnnnnnnntagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcccctgcatat |
277 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |
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| T |
6900415 |
tatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgtatat |
6900338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 22970089 - 22969821
Alignment:
| Q |
1 |
tgtttgttcactgtgagaaagaaagaaagaaa----ccatgattgtaaattgtggatggcgggacgtgtgttgtgttggtgtaaatcagaattgtgttag |
96 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22970089 |
tgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatcagaattgtgttag |
22969990 |
T |
|
| Q |
97 |
ctggtccttgggattgggcagttgggctactgggtgggagtgtttgatattttataaattgctagcagtagtgggtggggtgttattagcagtatatgta |
196 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22969989 |
ctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtt |
22969890 |
T |
|
| Q |
197 |
tatgtatatnnnnnnnnnnntagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcccct |
271 |
Q |
| |
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||| | | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
22969889 |
tataaaaa------aaaatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct |
22969821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 81 - 272
Target Start/End: Complemental strand, 22962718 - 22962526
Alignment:
| Q |
81 |
atcagaattgtgttagctggtccttgggattgggcagttgggctactgggtgggagtgtttgatattttataaattgct--agcagtagtgggtggggtg |
178 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||| ||||| || |||| |||||||||||||| |
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| T |
22962718 |
atcagaattgtgttagctgggctttgggattgggcagttgggctattgggtgagagtgtttgatattttagaaattactaaagcaatagtgggtggggtg |
22962619 |
T |
|
| Q |
179 |
ttattagcagtatatgtatatgtatat-nnnnnnnnnnntagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcccctg |
272 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
22962618 |
ttattagcagtata--tatatgtatataaaaaaaaaaattagaaaaatttgtgcaggcaggagcccccacaatcatgtgagtggctctgcccctg |
22962526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 21880536 - 21880804
Alignment:
| Q |
1 |
tgtttgttcactgtgagaa----agaaagaaagaaaccatgattgtaaattgtggatggcgggacgtgtgttgtgttggtgtaaatcagaattgtgttag |
96 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21880536 |
tgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatcagaattgtgttag |
21880635 |
T |
|
| Q |
97 |
ctggtccttgggattgggcagttgggctactgggtgggagtgtttgatattttataaattgctagcagtagtgggtggggtgttattagcagtatatgta |
196 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21880636 |
ctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttattagcagtatatgtt |
21880735 |
T |
|
| Q |
197 |
tatgtatatnnnnnnnnnnntagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcccct |
271 |
Q |
| |
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||| | | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
21880736 |
tataaaaa------aaaatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct |
21880804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 49603088 - 49603360
Alignment:
| Q |
1 |
tgtttgttcactgtgagaaaga----aagaaagaaaccatgattgtaaattgtggatggcgggacgtgtgttgtgttggtgtaaatcagaattgtgttag |
96 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49603088 |
tgtttgttcactgtgagaaagagagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaattgtgttag |
49603187 |
T |
|
| Q |
97 |
ctggtccttgggattgggcagttgggctactgggtgggagtgtttgatattttataaattgctagcagtagtgggtggggtgttattagcagtatatgta |
196 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||| || |
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|
| T |
49603188 |
ttgggccttgggattgggcagttaggctactgggtaggagtgtttgatattttagaaattgttagcaatagtaggtggggtgttattagcagtatatata |
49603287 |
T |
|
| Q |
197 |
tatgtatat-nnnnnnnnnnntagaaaagtttgtgcaggcatgagcccccacgatcatgtgagtggctccgcc |
268 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||| |
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|
| T |
49603288 |
tatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccgcaatcatgtgagtggctccgcc |
49603360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 41451213 - 41451263
Alignment:
| Q |
228 |
gtgcaggcatgagcccccacgatcatgtgagtggctccgcccctgcatata |
278 |
Q |
| |
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||||||||| |||||||||| | ||||||||||||||||||||| ||||| |
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|
| T |
41451213 |
gtgcaggcaggagcccccacactgatgtgagtggctccgcccctgtatata |
41451263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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