View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_97 (Length: 280)
Name: NF17763_high_97
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_97 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 42960159 - 42959918
Alignment:
| Q |
25 |
ttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttg |
124 |
Q |
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| T |
42960159 |
ttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttg |
42960060 |
T |
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| Q |
125 |
gcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttacc |
224 |
Q |
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| T |
42960059 |
gcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttacc |
42959960 |
T |
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| Q |
225 |
gaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
266 |
Q |
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| T |
42959959 |
gaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 266
Target Start/End: Original strand, 5504586 - 5504817
Alignment:
| Q |
35 |
tgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcat |
134 |
Q |
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| T |
5504586 |
tgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccctagagcagttctgcaaagacactgtcatcacaatttggcattaccat |
5504685 |
T |
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| Q |
135 |
ggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgg |
234 |
Q |
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| T |
5504686 |
ggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgttgacagactccgagtcgtcgatggttcaacgtttactgaatcaccag |
5504785 |
T |
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| Q |
235 |
gaacaaatcctcaagctactgtcatgatgatg |
266 |
Q |
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| T |
5504786 |
gaacaaatcctcaagccactgtgatgatgatg |
5504817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
90 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
139 |
Q |
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| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
90 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
139 |
Q |
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| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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