View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_98 (Length: 280)

Name: NF17763_high_98
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_98
NF17763_high_98
[»] chr2 (16 HSPs)
chr2 (14-280)||(39214694-39214960)
chr2 (52-222)||(39601861-39602031)
chr2 (97-223)||(39450414-39450540)
chr2 (106-218)||(39220086-39220198)
chr2 (106-220)||(39199516-39199630)
chr2 (100-223)||(39151816-39151939)
chr2 (109-220)||(39382247-39382358)
chr2 (100-223)||(39458127-39458250)
chr2 (109-219)||(39488225-39488335)
chr2 (51-170)||(44614345-44614464)
chr2 (97-223)||(39399044-39399170)
chr2 (229-279)||(39399051-39399101)
chr2 (14-134)||(39479278-39479397)
chr2 (100-223)||(39474308-39474431)
chr2 (146-223)||(39416403-39416480)
chr2 (246-279)||(39458210-39458243)
[»] chr6 (2 HSPs)
chr6 (227-279)||(16112406-16112458)
chr6 (106-223)||(16112348-16112465)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 39214694 - 39214960
Alignment:
Q  14 caaaggtgtcgccatatcatgatcacaatgaagacggagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39214694 caaaggtgtcgccatatcatgatcacaatgaagacggagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaacccataaatc 39214793  T
Q  114 attttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaag 213  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39214794 attttcctcgctgaagaaagaccttgctatgttagaaaaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagatttcagtctctaaag 39214893  T
Q  214 agagatattgggcattgcaagaggaagaggacagtagaggagaagagattgcagtccataaagagat 280  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39214894 agagatattgggcattgcaagaggaagaggaaagtagaggagaagagattgcagtccataaagagat 39214960  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 39601861 - 39602031
Alignment:
Q  52 gatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagata 151  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||  ||||||| |    
T  39601861 gatgaagatgatattcctttgttggatttaattaaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaaggccttgcattgttagaaa 39601960  T
Q  152 aattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatatt 222  Q
    | | |||| ||||| |||| | ||||  | || |||| ||||| |||||||||||  |||||| |||||||    
T  39601961 actcatttcaggaaggcaataagaagacgaaattagaagagaatagattgcagtccataaagatagatatt 39602031  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 39450414 - 39450540
Alignment:
Q  97 aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaaga 196  Q
    |||| ||| |||||||||||||||| |||||||||||||||| |  ||||||| ||||||||||||||||| |||||||||  | ||||||| || ||||    
T  39450414 aaattaactgataaatcattttcctcgctgaagaaagaccttacattgttagaaaaattatttgaggaatgtaaaaggaagcagaaagtagaagaaaaga 39450513  T
Q  197 gattgcagtctctaaagagagatattg 223  Q
    ||||||||||  | |||| ||||||||    
T  39450514 gattgcagtccatcaagacagatattg 39450540  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 39220086 - 39220198
Alignment:
Q  106 gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt 205  Q
    |||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||| || |||||||||  | |||| || ||||  ||||| ||||    
T  39220086 gataaatcattttcctcgctgaagaaagaccttgcggtgttagaaaaattatttgaggagtgtaaaaggaagcagaaagttgaagagagaagattacagt 39220185  T
Q  206 ctctaaagagaga 218  Q
    |  ||||||||||    
T  39220186 ccataaagagaga 39220198  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 39199630 - 39199516
Alignment:
Q  106 gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt 205  Q
    |||||||||||||||| |||||||||||| ||| |  || ||||  |||||||| |||||||||||||||||  | |||| || ||||| ||||||||||    
T  39199630 gataaatcattttcctcgctgaagaaagagcttacgctgctagaagaattatttaaggaatgcaaaaggaagcagaaagttgaagagaaaagattgcagt 39199531  T
Q  206 ctctaaagagagata 220  Q
    |  ||||||||||||    
T  39199530 ccataaagagagata 39199516  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 39151816 - 39151939
Alignment:
Q  100 tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat 199  Q
    ||||| ||||||||| ||||||||||||||||||| |||||  |  | || |||| | |||| ||||||||||||||   ||||||||| |||||||||     
T  39151816 tcaactgataaatcaatttccttgctgaagaaagagcttgcatttgtggaaaaatcaattgatgaatgcaaaaggaaaaggcaagtagaagagaagagac 39151915  T
Q  200 tgcagtctctaaagagagatattg 223  Q
    |||||||  |||||||| ||||||    
T  39151916 tgcagtcaataaagagaaatattg 39151939  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 39382358 - 39382247
Alignment:
Q  109 aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctc 208  Q
    ||||| ||||||| |||||||||||||||| |  |||||||  ||||||||| |||||||||| |||||  | || |||| ||||||||||| |||||      
T  39382358 aaatcgttttcctcgctgaagaaagaccttacgctgttagaagaattatttgtggaatgcaaatggaagcagaaactagaagagaagagattacagtcca 39382259  T
Q  209 taaagagagata 220  Q
    ||||||||||||    
T  39382258 taaagagagata 39382247  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 39458127 - 39458250
Alignment:
Q  100 tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat 199  Q
    ||||| ||| ||||||||| || |||||||||||| ||  |  || |||| |||| ||||||||| |||||||||| |   |||||||| ||||||||||    
T  39458127 tcaactgatgaatcatttttctcgctgaagaaagaactcacattggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagat 39458226  T
Q  200 tgcagtctctaaagagagatattg 223  Q
    |||||||  |||||||||||||||    
T  39458227 tgcagtccataaagagagatattg 39458250  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 39488335 - 39488225
Alignment:
Q  109 aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctc 208  Q
    |||||||||||||||||||| ||||| |||||  || |||| |  | |||||||||||||||||||||   ||||||||| |||  |||| ||||||||     
T  39488335 aaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagaggggagactgcagtcta 39488236  T
Q  209 taaagagagat 219  Q
    |||||||||||    
T  39488235 taaagagagat 39488225  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 44614345 - 44614464
Alignment:
Q  51 agatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagat 150  Q
    ||||||||||||||||| || || | || ||| ||||||| ||||||||||| | ||||  |||||||||| ||||| |||||| |||||   |||| |     
T  44614345 agatgaagatgatattccttcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaa 44614444  T
Q  151 aaattatttgaggaatgcaa 170  Q
    |||| |||||||||||||||    
T  44614445 aaatcatttgaggaatgcaa 44614464  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 39399170 - 39399044
Alignment:
Q  97 aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaaga 196  Q
    |||||| | |||||||||||||| | ||| ||||||||  ||    || |||| ||||| ||| || ||||||||||||||  | ||||||| |||||||    
T  39399170 aaatcagctgataaatcattttcatcgctcaagaaagaagttaaattggtagaaaaattgtttaagaaatgcaaaaggaagaggaaagtagaagagaaga 39399071  T
Q  197 gattgcagtctctaaagagagatattg 223  Q
    ||||||||||  |||||||||||||||    
T  39399070 gattgcagtccataaagagagatattg 39399044  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 39399101 - 39399051
Alignment:
Q  229 tgcaagaggaagaggacagtagaggagaagagattgcagtccataaagaga 279  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  39399101 tgcaaaaggaagaggaaagtagaagagaagagattgcagtccataaagaga 39399051  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 39479397 - 39479278
Alignment:
Q  14 caaaggtgtcgccatatcatgatcacaatgaagacggagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatc 113  Q
    |||||||||| |||||| ||||||||   ||||| | |||||||||| | ||||  |||||  ||  |||||||||| | || ||||| || ||||||||    
T  39479397 caaaggtgtcaccatattatgatcacggcgaagatgaagatgaagatcaaattccgttgtcaaata-aattaaaaggtcgggaaaatcgactgataaatc 39479299  T
Q  114 attttccttgctgaagaaaga 134  Q
    |||||||| ||||||||||||    
T  39479298 attttcctcgctgaagaaaga 39479278  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 39474431 - 39474308
Alignment:
Q  100 tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat 199  Q
    ||||| ||||||||||||||||  || |||||||| |||||  |  |||| |||| ||||||||| ||| |||||| |  |||| ||||  || ||||||    
T  39474431 tcaacggataaatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgccaaaggacgacgcaaatagaaaaggagagat 39474332  T
Q  200 tgcagtctctaaagagagatattg 223  Q
    |||| ||  |||||||||||||||    
T  39474331 tgcattccataaagagagatattg 39474308  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 39416480 - 39416403
Alignment:
Q  146 tagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatattg 223  Q
    |||| |||| |||||||||| ||| |||| |  ||||||||||  ||||||||||||| ||  |||||||||||||||    
T  39416480 tagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaagagattgcattccataaagagagatattg 39416403  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 39458210 - 39458243
Alignment:
Q  246 agtagaggagaagagattgcagtccataaagaga 279  Q
    |||||| |||||||||||||||||||||||||||    
T  39458210 agtagaagagaagagattgcagtccataaagaga 39458243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 16112406 - 16112458
Alignment:
Q  227 attgcaagaggaagaggacagtagaggagaagagattgcagtccataaagaga 279  Q
    ||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||    
T  16112406 attgcaaaaggaagaggacagaagaagagaagaaattgcagtccataaagaga 16112458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 16112348 - 16112465
Alignment:
Q  106 gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt 205  Q
    |||||||||||||||| ||||||||| ||  ||  | || |||| ||||| ||| || | ||||||||||||  |  || ||| ||||||| ||||||||    
T  16112348 gataaatcattttcctcgctgaagaatgaagttaatttggtagaaaaattgtttaagaattgcaaaaggaagaggacagaagaagagaagaaattgcagt 16112447  T
Q  206 ctctaaagagagatattg 223  Q
    |  |||||||||||||||    
T  16112448 ccataaagagagatattg 16112465  T

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