View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_104 (Length: 294)
Name: NF17763_low_104
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 33092392 - 33092497
Alignment:
| Q |
19 |
tatcttaagttgtacacactccaatgaagtgtacacaacattttcctattcctatgtaaaatatatctatagttgcaacttactactatgcatccaacta |
118 |
Q |
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| T |
33092392 |
tatcttaaggtgtacacactccaatcaagtgtacacaacattttcc------tatgtaaaatatatctatagttgcaacttactactatgcatccaacta |
33092485 |
T |
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| Q |
119 |
aagattccgctt |
130 |
Q |
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| T |
33092486 |
aagattccgctt |
33092497 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 33092911 - 33093014
Alignment:
| Q |
180 |
accgcaataaaatcgtgaatacatcctatacctacatttttcct---aaaaaagaaaattcttatacctacatttatttgtttatgaaatcctattacac |
276 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
33092911 |
accgcaataaaatcgtaaatacatcctatacctacatttttcctaaaaaaaaaaaaaattcttatacctacatttatttatttatgaaagcctattacac |
33093010 |
T |
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| Q |
277 |
aggt |
280 |
Q |
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|||| |
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| T |
33093011 |
aggt |
33093014 |
T |
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