View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_106 (Length: 288)

Name: NF17763_low_106
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_106
NF17763_low_106
[»] chr6 (7 HSPs)
chr6 (44-274)||(17945593-17945822)
chr6 (44-194)||(9006584-9006734)
chr6 (44-194)||(8997401-8997551)
chr6 (42-154)||(32093878-32093990)
chr6 (1-47)||(2148579-2148625)
chr6 (96-194)||(11376351-11376449)
chr6 (50-154)||(27748291-27748395)
[»] scaffold0096 (1 HSPs)
scaffold0096 (44-194)||(51570-51720)
[»] scaffold0028 (1 HSPs)
scaffold0028 (44-194)||(84377-84527)
[»] chr7 (1 HSPs)
chr7 (44-194)||(609287-609437)
[»] chr5 (3 HSPs)
chr5 (44-194)||(725779-725929)
chr5 (47-194)||(15328061-15328208)
chr5 (47-194)||(18710551-18710698)
[»] chr4 (4 HSPs)
chr4 (44-194)||(114703-114853)
chr4 (47-194)||(14934860-14935007)
chr4 (1-44)||(17267467-17267510)
chr4 (3-45)||(34098060-34098102)
[»] chr3 (2 HSPs)
chr3 (44-194)||(19687352-19687502)
chr3 (50-194)||(25508651-25508795)
[»] chr2 (3 HSPs)
chr2 (44-175)||(24991627-24991758)
chr2 (1-46)||(33804293-33804338)
chr2 (1-46)||(33808775-33808820)
[»] chr8 (1 HSPs)
chr8 (47-194)||(45496512-45496659)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-44)||(34614-34657)
[»] scaffold0500 (1 HSPs)
scaffold0500 (42-175)||(6427-6559)
[»] scaffold0254 (1 HSPs)
scaffold0254 (3-47)||(25047-25094)
[»] scaffold0049 (1 HSPs)
scaffold0049 (50-126)||(17612-17688)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 274
Target Start/End: Complemental strand, 17945822 - 17945593
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17945822 accaatcctccttctttttcgatgaattagagaaaactttgtttatctctagtcatatatcttgagcatccaatgtccaagtactagggccttttcttga 17945723  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccatgnnnnnnngggtcctctgtagctagtgttatttttagagaatcctcttt 243  Q
    ||||||||||| | || ||||||||||||||| |||||||||| |||||||        ||||||| ||| | |||||||||||||||||||||||||||    
T  17945722 ctatcatgagacattcctgcaatagaagttagtagtgttttgggtacccatatttttttgggtcctatgtggttagtgttatttttagagaatcctcttt 17945623  T
Q  244 atgaaacttgatgaaatttgttttagaagtg 274  Q
    |||||||||||| ||||||||||||||||||    
T  17945622 atgaaacttgat-aaatttgttttagaagtg 17945593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 9006734 - 9006584
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  9006734 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 9006635  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| |||| ||||| |||||||    
T  9006634 ctgttatgagacattcctgcagtagaagttagtagtgctttgggtacccat 9006584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 8997551 - 8997401
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  8997551 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 8997452  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  8997451 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 8997401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 32093990 - 32093878
Alignment:
Q  42 tcaccaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttctt 141  Q
    |||| |||||||||||||||| ||||||   |||||||||||| ||||||| |||| ||| ||||||||||||| |||||||||| | ||| ||||||||    
T  32093990 tcactaatcctccttcctttttgatgaaggtgagaaaactttgtttatctccagtcgtatgtcttgagcatccactgtccaagtactagggtcttttctt 32093891  T
Q  142 gactatcatgaga 154  Q
    |||||| ||||||    
T  32093890 gactattatgaga 32093878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2148579 - 2148625
Alignment:
Q  1 tataggtttccttccacatacttaaagaattcatgatctcatcacca 47  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  2148579 tataggtttccttccacgtacttaaagaactcatgatctcatcacca 2148625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 11376449 - 11376351
Alignment:
Q  96 tcatatatcttgagcatccaatgtccaagtattggggccttttcttgactatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    |||||| ||||||||||||| ||||||||||    ||| ||||||||||| | |||||| | || |||| ||  |||||| ||||||||||||||||||    
T  11376449 tcatatgtcttgagcatccattgtccaagtaccaaggctttttcttgactgttatgagacattcctgcagtatgagttagtagtgttttggatacccat 11376351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 27748291 - 27748395
Alignment:
Q  50 cctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttgactatca 149  Q
    |||||||| ||||| |||||  | || || ||||| || |||| |||||||| ||||||||||||| ||||||||||    ||| ||||||||||| |||    
T  27748291 cctccttctttttcaatgaaggacaggaagctttgtttgtctccagtcatatgtcttgagcatccactgtccaagtaccaaggctttttcttgactgtca 27748390  T
Q  150 tgaga 154  Q
    |||||    
T  27748391 tgaga 27748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 51720 - 51570
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  51720 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 51621  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  51620 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 51570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 84527 - 84377
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  84527 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 84428  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  84427 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 84377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 609437 - 609287
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  609437 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 609338  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  609337 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 609287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 725779 - 725929
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  725779 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 725878  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  725879 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 725929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 15328061 - 15328208
Alignment:
Q  47 aatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttgacta 146  Q
    ||||||||||| ||||||| |||  | || |||||||| ||||||| |||||||| ||||||||||||| ||||||||||    ||| |||||||||||     
T  15328061 aatcctccttctttttcgacgaaggataggaaactttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccaaggctttttcttgactg 15328160  T
Q  147 tcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    | |||||  | || |||| |||||||||| |  ||||||| |||||||    
T  15328161 ttatgaggcattcctgcagtagaagttagtaaagttttgggtacccat 15328208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 18710698 - 18710551
Alignment:
Q  47 aatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttgacta 146  Q
    ||||||||||| ||||||| |||  | || |||||||| ||||||| |||||||| ||||||||||||| ||||||||||    ||| |||||||||||     
T  18710698 aatcctccttctttttcgacgaaggataggaaactttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccaaggctttttcttgactg 18710599  T
Q  147 tcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    | |||||  | || |||| |||||||||| |  ||||||| |||||||    
T  18710598 ttatgaggcattcctgcagtagaagttagtaaagttttgggtacccat 18710551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 114853 - 114703
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  114853 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 114754  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  114753 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 114703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 14935007 - 14934860
Alignment:
Q  47 aatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttgacta 146  Q
    ||||||||||| ||||||| |||  | ||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||    ||| |||||||||||     
T  14935007 aatcctccttctttttcgacgaaggatagaaaactttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccaaggctttttcttgactg 14934908  T
Q  147 tcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    | |||||  | || |||| |||||||||| || || |||| |||||||    
T  14934907 ttatgaggcattcctgcagtagaagttagtagagtcttgggtacccat 14934860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17267467 - 17267510
Alignment:
Q  1 tataggtttccttccacatacttaaagaattcatgatctcatca 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  17267467 tataggtttccttccacatacttaaagaactcatgatctcatca 17267510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 34098102 - 34098060
Alignment:
Q  3 taggtttccttccacatacttaaagaattcatgatctcatcac 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  34098102 taggtttccttccacatacttaaagaactcatgatctcatcac 34098060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 19687502 - 19687352
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  19687502 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 19687403  T
Q  144 ctatcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || | |||||| | || |||| |||||||||| | || ||||| |||||||    
T  19687402 ctgttatgagacattcctgcagtagaagttagtaatgctttgggtacccat 19687352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 25508651 - 25508795
Alignment:
Q  50 cctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttgactatca 149  Q
    |||||||| ||||| |||||  | || |||||||| || |||| |||||||| | ||||||||||| | ||| |||    |||||||||||||| | |||    
T  25508651 cctccttctttttcaatgaaggataggaaactttgtttgtctccagtcatatgttttgagcatccactatcccagtgccagggccttttcttgattgtca 25508750  T
Q  150 tgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    || || | || |||  |||||||||| ||||| |||| |||||||    
T  25508751 tgtgacattcctgctgtagaagttagtagtgtcttgggtacccat 25508795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 24991758 - 24991627
Alignment:
Q  44 accaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttga 143  Q
    ||||||||||||||||||| | ||||  ||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||||   |||| |||||||||    
T  24991758 accaatcctccttcctttttggtgaaggagagaaagctttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccagggctttttcttga 24991659  T
Q  144 ctatcatgagatactcttgcaatagaagttag 175  Q
    || | |||||| | || |||| ||||| ||||    
T  24991658 ctgttatgagacattcctgcagtagaaattag 24991627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33804338 - 33804293
Alignment:
Q  1 tataggtttccttccacatacttaaagaattcatgatctcatcacc 46  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||    
T  33804338 tataggttttcttccacatatttaaagaactcatgatctcatcacc 33804293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33808820 - 33808775
Alignment:
Q  1 tataggtttccttccacatacttaaagaattcatgatctcatcacc 46  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||    
T  33808820 tataggttttcttccacatatttaaagaactcatgatctcatcacc 33808775  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 45496512 - 45496659
Alignment:
Q  47 aatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttcttgacta 146  Q
    ||||||||||| ||||||| |||  | ||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||    ||| |||||||||||     
T  45496512 aatcctccttctttttcgacgaaggatagaaaactttgtttatctccagtcatatgtcttgagcatccactgtccaagtaccaaggctttttcttgactg 45496611  T
Q  147 tcatgagatactcttgcaatagaagttagcagtgttttggatacccat 194  Q
    | |||||  | || |||| |||||||||| || || |||| |||||||    
T  45496612 ttatgaggcattcctgcagtagaagttagtagagtcttgggtacccat 45496659  T

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Target: scaffold0083 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34657 - 34614
Alignment:
Q  1 tataggtttccttccacatacttaaagaattcatgatctcatca 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  34657 tataggtttccttccacatacttaaagaactcatgatctcatca 34614  T

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Target: scaffold0500 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 175
Target Start/End: Complemental strand, 6559 - 6427
Alignment:
Q  42 tcaccaatcctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagtattggggccttttctt 141  Q
    ||||||||||||||||||||| | ||||  ||||||| ||| | ||||||  | |||||| ||||||||||||| ||| ||||||   |||| |||||||    
T  6559 tcaccaatcctccttcctttttggtgaaggagagaaagctt-gtttatcttcattcatatgtcttgagcatccactgttcaagtaccagggctttttctt 6461  T
Q  142 gactatcatgagatactcttgcaatagaagttag 175  Q
    || | | |||||| | || |||| ||||||||||    
T  6460 gattgttatgagacattcctgcagtagaagttag 6427  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 25047 - 25094
Alignment:
Q  3 taggtttccttccaca---tacttaaagaattcatgatctcatcacca 47  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||||    
T  25047 taggtttccttccacacggtacttaaagaactcatgatctcatcacca 25094  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 17688 - 17612
Alignment:
Q  50 cctccttccttttcgatgaattagagaaaactttgcttatctctagtcatatatcttgagcatccaatgtccaagta 126  Q
    |||||||| ||||| |||||  | || || ||||| || |||| |||||||| ||||||||||||| ||||||||||    
T  17688 cctccttctttttcaatgaaggacaggaagctttgtttgtctccagtcatatgtcttgagcatccactgtccaagta 17612  T

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