View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_107 (Length: 286)

Name: NF17763_low_107
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_107
NF17763_low_107
[»] chr5 (6 HSPs)
chr5 (19-277)||(1485384-1485642)
chr5 (108-253)||(1504391-1504534)
chr5 (101-255)||(1491620-1491772)
chr5 (101-254)||(1481730-1481881)
chr5 (101-261)||(1477619-1477777)
chr5 (101-254)||(1496830-1496981)
[»] chr2 (1 HSPs)
chr2 (101-261)||(24165431-24165589)
[»] chr7 (5 HSPs)
chr7 (101-259)||(5283893-5284049)
chr7 (101-259)||(5290078-5290234)
chr7 (101-259)||(5302081-5302237)
chr7 (108-259)||(5309725-5309874)
chr7 (108-259)||(5314542-5314691)
[»] chr1 (3 HSPs)
chr1 (101-256)||(44128198-44128351)
chr1 (101-256)||(44132403-44132556)
chr1 (101-256)||(44140825-44140978)
[»] chr3 (1 HSPs)
chr3 (196-252)||(39029635-39029691)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 1485384 - 1485642
Alignment:
Q  19 tttatggactagtttctacgattgtacgtagagaatactcgccttacaacaataaaatagatattcacaagaatcatagggcagggcaaaaggccctgca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1485384 tttatggactagtttctacgattgtacgtagagaatactcgccttacaacaataaaatagatattcacaagaatcatagggcagggcagaaggccctgca 1485483  T
Q  119 atcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagcgagcacaagac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||    
T  1485484 atcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatacttcagaatcgcaaatagcgagcacaagac 1485583  T
Q  219 gcaactcaaagagaaatttcagcgcatttgtaagtattcttttaatctattagtattat 277  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1485584 gcaactcagagagaaatttcagcgcatttgtaagtattcttttaatctattagtattat 1485642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 1504391 - 1504534
Alignment:
Q  108 aaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagc 207  Q
    |||| ||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||  ||||||||||||||||| ||     
T  1504391 aaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttc--tactttagaatcacaaacagt 1504488  T
Q  208 gagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagt 253  Q
    || ||||| ||  ||||||||||||||||||| ||||| |||||||    
T  1504489 gaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 1504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 255
Target Start/End: Original strand, 1491620 - 1491772
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||| ||||||| ||| |||||||| || |||||||||||| |||| |||||||||||||||| |||| ||||||  | ||||||| ||||||    
T  1491620 agggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctgatt--tttactttaaaatcac 1491717  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtat 255  Q
    ||||||||| ||||| ||  | |||||||| |||||||| ||||| |||||||||    
T  1491718 aaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 1481730 - 1481881
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||| ||||||| ||| |||||||| || |||||||||||| |||| |||||||||||||||| |||| ||||||  | ||||||| ||||||    
T  1481730 agggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctgatt--tttactttaaaatcac 1481827  T
Q  201 aaatagcgagca-caagacgcaactcaaagagaaatttcagcgcatttgtaagta 254  Q
    ||| || |||||  ||| || |||||||||| |||||||| ||||| ||||||||    
T  1481828 aaacagtgagcataaagtcg-aactcaaagaaaaatttcaacgcatgtgtaagta 1481881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 1477619 - 1477777
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||||||||| | |||| ||||||| || |||||||||||| | || |||||||||||||||| |||| ||||||  | ||||| | ||||||    
T  1477619 agggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgttgaacaaagcacatatcctgatt--tttacttcaaaatcac 1477716  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctttt 261  Q
    ||| || ||||||||     |||| ||||| |||||||| ||||| |||||||||||||||    
T  1477717 aaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtattctttt 1477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 1496830 - 1496981
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||||||| |||  ||||| || || || |||||||||||| |||||||| |||||||||||| |||| ||||| |||||  || ||| ||||    
T  1496830 agggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctgatctctat--ttcagagtcac 1496927  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagta 254  Q
    ||| |  |||||||||||  || | ||| ||||||| |||||||| ||| ||||    
T  1496928 aaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 1496981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 24165589 - 24165431
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| ||||||||||||  ||||||||||| || ||||||||||||||||| |||||||||||||||| |||| ||||||||  ||||||||| ||||    
T  24165589 agggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatcctgatttc--tactttagagtcac 24165492  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctttt 261  Q
    ||| |||||||||||||   |||||||||| |||||||| |||||||||||||||| ||||    
T  24165491 aaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtattatttt 24165431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 5283893 - 5284049
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||||||||||| |||||||||||| || |||||||||||| |||||||||||||||||||||  ||| ||||||  | ||||||| ||||||    
T  5283893 agggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaagcacgtatcctgatt--tttactttaaaatcac 5283990  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 259  Q
    ||| || || ||||| ||  |||| |||||||||||||||||||| |||||||||||||    
T  5283991 aaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtattctt 5284049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 5290234 - 5290078
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||| |||||||  ||||| ||||| || |||||||||||| |||||||||||||||||||||  ||| ||||||| ||  ||||| ||| ||    
T  5290234 agggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgattttta--ctttaaaattac 5290137  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 259  Q
    |||||| || ||||| ||  ||||||||||||||||||||||||| |||||||||||||    
T  5290136 aaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5290078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 5302081 - 5302237
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||| |||||||  ||||| ||||| || |||||||||||| |||||||||||||||||||||  ||| ||||||| ||  ||||| ||| ||    
T  5302081 agggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgattttta--ctttaaaattac 5302178  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 259  Q
    |||||| || ||||| ||  ||||||||||||||||||||||||| |||||||||||||    
T  5302179 aaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5302237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 5309725 - 5309874
Alignment:
Q  108 aaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagc 207  Q
    |||| |||||||  || |||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||  | ||||||| ||||||||||||     
T  5309725 aaggtcctgcaactattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatt--tttactttaaaatcacaaatagt 5309822  T
Q  208 gagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 259  Q
    || ||||| ||  |||| || ||||||||||||||||| |||||||||||||    
T  5309823 gaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtattctt 5309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 5314542 - 5314691
Alignment:
Q  108 aaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagc 207  Q
    |||| ||||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||  | ||||||| ||| ||||||||     
T  5314542 aaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatt--tttactttaaaattacaaatagt 5314639  T
Q  208 gagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 259  Q
    || |||||     ||||||||||||||||||||||||| |||||||||||||    
T  5314640 gaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5314691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 44128198 - 44128351
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||||||||||| ||| || ||||| || |||||||| ||| | ||||||||||||||||||| |||| ||||||||  ||||| | ||||||    
T  44128198 agggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttc--tacttcaaaatcac 44128295  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtatt 256  Q
    |||||| || ||||||||  |||||||||||||||| || ||||| ||||||||||    
T  44128296 aaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44128351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 44132403 - 44132556
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||||||||||| ||| || ||||| || |||||||| ||| | ||||||||||||||||||| |||| ||||||||  ||||| | ||||||    
T  44132403 agggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttc--tacttcaaaatcac 44132500  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtatt 256  Q
    |||||| || ||||||||  |||||||||||||||| || ||||| ||||||||||    
T  44132501 aaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44132556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 44140825 - 44140978
Alignment:
Q  101 agggcaaaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 200  Q
    |||||| |||||||||||| ||| || ||||| || |||||||| ||| | ||||||||||||||||||| |||| ||||||||  ||||| | ||||||    
T  44140825 agggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttc--tacttcaaaatcac 44140922  T
Q  201 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtatt 256  Q
    |||||| || ||||||||  |||||||||||||||| || ||||| ||||||||||    
T  44140923 aaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44140978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 39029635 - 39029691
Alignment:
Q  196 atcacaaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaag 252  Q
    ||||||||||| |||||||||||  | || ||||| |||||||||||||| ||||||    
T  39029635 atcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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