View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_11 (Length: 621)
Name: NF17763_low_11
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 62 - 600
Target Start/End: Original strand, 20595961 - 20596497
Alignment:
| Q |
62 |
gaacctgtgtttgatgatgaggtagtggatgagcaaattaacacaaaccaaactgttggtcaatctagcatagtcagagttgaggaagaggagtataaca |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20595961 |
gaacctgtgtttgatgatgaggtagtggatgagcaaattaacacaaaccaaactattggtcaatctagcatagtcagagttgaggaagaggagtataaca |
20596060 |
T |
|
| Q |
162 |
atgatgtgttagagagtgaacctgaaagtgaagaggaagaggaaaatggtgggagtaagcttaagtttgccacatttaagaaacctgaaaacaagcgtga |
261 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20596061 |
gtgatatgttagagagtggacctgaaagtgaagaggaagaggaaaatggtgggagtaagcttaagtttgccacatttaagaaacctgaaaacatgcgtga |
20596160 |
T |
|
| Q |
262 |
ctatgagtgggaggtagggacttattttgtgtcaaagaaggaatttcaagatgctgtaagaacatttgttgtacattctggtaggaatttaaagtttctt |
361 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |
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| T |
20596161 |
ct--gagtgggaggtagggacttattttgtgtcaaagaaggaatttcaagatgctgtaagaacatttgctgtacattctggcaggaatttaaagtttgat |
20596258 |
T |
|
| Q |
362 |
aagaatgataaaaggagggtgaaggtaatttatcgtgggaagaagggttcatgtgagagtcagatgcactgtgtaaaaataccaggtgagaaaacatggc |
461 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20596259 |
aagaatgataaaaggagggtgaaggtaatttgtcgtgggaagaagggttcatgtgagagtcagatgcactgtgtaaaaataccaggtgaggaaacatggc |
20596358 |
T |
|
| Q |
462 |
aattgaggaggataaagggtaaacacacttgcaatagggagtacaagctaaggataatgaactcagattggttgggtgataagctgcattcaagggtgaa |
561 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596359 |
aattgaggaggataaagggtaaacacacttgcagtagggagtacaagctaaggataatgaactcagattggttgggtgataagctgcattcaagggtgaa |
20596458 |
T |
|
| Q |
562 |
agagaatccaaacttgcaattaaagactattgtgactag |
600 |
Q |
| |
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| ||||| |||||||||| |||||||||||||||||||| |
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| T |
20596459 |
aaagaattcaaacttgcagttaaagactattgtgactag |
20596497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 48769372 - 48769411
Alignment:
| Q |
19 |
aaaaccttcaaaaatattctttagcggtggcagtgaacga |
58 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
48769372 |
aaaaccttcaaaaatattctttagcggtggcagagaacga |
48769411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 62 - 600
Target Start/End: Original strand, 8696960 - 8697498
Alignment:
| Q |
62 |
gaacctgtgtttgatgatgaggtagtggatgagcaaattaacacaaaccaaactgttggtcaatctagcatagtcagagttgaggaagaggagtataaca |
161 |
Q |
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|
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696960 |
gaacctgtgtttgatgatgaggtagtgggtgagcaaactaacacaaaccaaaatgttggtcaatctagcatagtcagagttgaggaagaggagtataaca |
8697059 |
T |
|
| Q |
162 |
atgatgtgttagagagtgaacctgaaagtgaagaggaagaggaaaatggtgggagtaagcttaagtttgccacatttaagaaacctgaaaacaagcgtga |
261 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8697060 |
gtgatgtgttagagagtggagctgaaagtgaagatgaagaggaaaatggtgggaataagcttaagtttgccacatttaagaaacctgaaaatatgcgtga |
8697159 |
T |
|
| Q |
262 |
ctatgagtgggaggtagggacttattttgtgtcaaagaaggaatttcaagatgctgtaagaacatttgttgtacattctggtaggaatttaaagtttctt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| || |
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|
| T |
8697160 |
ctatgagtgggaggtagggacttattttgtgtcaaagaaggaatttcaagatgctgttagaacatttgctgtacattctggcaggaatttaaagtttgtt |
8697259 |
T |
|
| Q |
362 |
aagaatgataaaaggagggtgaaggtaatttatcgtgggaagaagggttcatgtgagagtcagatgcactgtgtaaaaataccaggtgagaaaacatggc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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|
| T |
8697260 |
aagaatgataaaaggagggtgaaggtaatatgtcgtgggaagaagggttcatgtgagagtcaaatgcactgtgtaaaaataccagatgaggaaacatggc |
8697359 |
T |
|
| Q |
462 |
aattgaggaggataaagggtaaacacacttgcaatagggagtacaagctaaggataatgaactcagattggttgggtgataagctgcattcaagggtgaa |
561 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8697360 |
aattgaggaggataaagggtaaacacacttgcagtagggagtacaagctaaggataatgaactcagattggttaggtgataagctgcattcaagggtgaa |
8697459 |
T |
|
| Q |
562 |
agagaatccaaacttgcaattaaagactattgtgactag |
600 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||| |
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| T |
8697460 |
agagaatccaagcttgcagttaaagactattgtgactag |
8697498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 570
Target Start/End: Original strand, 23330698 - 23330837
Alignment:
| Q |
431 |
tgtgtaaaaataccaggtgagaaaacatggcaattgaggaggataaagggtaaacacacttgcaatagggagtacaagctaaggataatgaactcagatt |
530 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||| ||||| | |||| ||| | | ||| | ||||| ||||| ||||| | |
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| T |
23330698 |
tgtgtaaagataccaaatgaagaaacatggcaattgaggaggataaagggaaaacatagctgcactagagcatttaaggtcaggatgatgaattcagaat |
23330797 |
T |
|
| Q |
531 |
ggttgggtgataagctgcattcaagggtgaaagagaatcc |
570 |
Q |
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||||||||| |||||| |||||||||||||| || ||||| |
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| T |
23330798 |
ggttgggtggtaagctacattcaagggtgaaggacaatcc |
23330837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 570
Target Start/End: Original strand, 20622315 - 20622454
Alignment:
| Q |
431 |
tgtgtaaaaataccaggtgagaaaacatggcaattgaggaggataaagggtaaacacacttgcaatagggagtacaagctaaggataatgaactcagatt |
530 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||| ||||| | |||| ||| | | ||| | ||||| ||||| |||| | |
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| T |
20622315 |
tgtgtaaagataccaaatgaagaaacatggcaattgaggaggataaagggaaaacatagctgcactagagcatttaaggtcaggatgatgaattcagcat |
20622414 |
T |
|
| Q |
531 |
ggttgggtgataagctgcattcaagggtgaaagagaatcc |
570 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || ||||| |
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| T |
20622415 |
ggttgggtggtaagctacattcaagggtgaaggacaatcc |
20622454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 37104437 - 37104373
Alignment:
| Q |
260 |
gactatgagtgggaggtagggacttattttgtgtcaaagaaggaatttcaagatgctgtaagaac |
324 |
Q |
| |
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|||||||| ||||||| |||||| |||||||||| |||||| | ||||||||||| || ||||| |
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| T |
37104437 |
gactatgaatgggaggcagggacatattttgtgtttaagaagcagtttcaagatgcggtgagaac |
37104373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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