View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_110 (Length: 280)
Name: NF17763_low_110
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_110 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 42960159 - 42959918
Alignment:
| Q |
25 |
ttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960159 |
ttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttg |
42960060 |
T |
|
| Q |
125 |
gcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttacc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960059 |
gcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttacc |
42959960 |
T |
|
| Q |
225 |
gaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42959959 |
gaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 266
Target Start/End: Original strand, 5504586 - 5504817
Alignment:
| Q |
35 |
tgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcat |
134 |
Q |
| |
|
||||||| ||| | ||||| | |||||||| |||| |||||| ||| || ||||| ||||| || | ||||||||| ||||| |||||||| || ||| |
|
|
| T |
5504586 |
tgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccctagagcagttctgcaaagacactgtcatcacaatttggcattaccat |
5504685 |
T |
|
| Q |
135 |
ggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgg |
234 |
Q |
| |
|
|||||||| ||||| || ||||| | | ||| |||||||||||| ||| ||||||| || ||| | ||||| ||||| ||||| ||||| || | |
|
|
| T |
5504686 |
ggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgttgacagactccgagtcgtcgatggttcaacgtttactgaatcaccag |
5504785 |
T |
|
| Q |
235 |
gaacaaatcctcaagctactgtcatgatgatg |
266 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |
|
|
| T |
5504786 |
gaacaaatcctcaagccactgtgatgatgatg |
5504817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
90 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
139 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
90 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
139 |
Q |
| |
|
||||| |||||||||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University