View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_113 (Length: 279)
Name: NF17763_low_113
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_113 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 8112349 - 8112615
Alignment:
| Q |
1 |
ttatttatgctttgcatatattttgttcgccggtcatggatagtccacccaaaaaagatagatggtcttgtagnnnnnnnnnnnnnnnnnnacaatatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
8112349 |
ttatttatgctttgcatatattttgttcgcgggtcatggatagtc-acccaaaaaagatagatggtgttgtagtttttttctttcttttttacaatatac |
8112447 |
T |
|
| Q |
101 |
aattgctacctatttactaataaatcaagagatataacgcagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8112448 |
aattgctacctatttactaacaaatcaagagatataacgtagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaag |
8112547 |
T |
|
| Q |
201 |
aaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8112548 |
aaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
8112615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 8107908 - 8108029
Alignment:
| Q |
145 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttgg |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8107908 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaataagatcaattcccttttgaactattgatagaatttgg |
8108007 |
T |
|
| Q |
245 |
cacaaagaggcaaaagaccaca |
266 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8108008 |
cacaaagaggcaaaagaccaca |
8108029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 8107805 - 8107863
Alignment:
| Q |
92 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8107805 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgcagtcaaaagt |
8107863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 8094219 - 8094302
Alignment:
| Q |
161 |
taagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggc |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
8094219 |
taagctttagatctttaaaatacagtaatctccaagaaa-aaaaattaagatcaatcatcttttgaactgttgatagaatttggc |
8094302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8107714 - 8107776
Alignment:
| Q |
1 |
ttatttatgctttgcatatattttgttcgccggtcatggatagtccacccaaaaaagatagatg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
8107714 |
ttatttatgctttgcatatattttgttccccggtcatggatggt-cacccaaaaaagaaagatg |
8107776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 30878977 - 30878923
Alignment:
| Q |
96 |
tatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
150 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
30878977 |
tatacaatttctatctatttgctaataaatcaagagatataacacagtcaaaagt |
30878923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University