View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_114 (Length: 276)
Name: NF17763_low_114
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_114 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 31759998 - 31760254
Alignment:
| Q |
1 |
gaaagcaaataatttaatatgacctgcacaaaatatttcaatgtttctcaaaacactggctgcagcaaactacactgtagtgaactatggaaagcctaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31759998 |
gaaagcaaataatttaatatgacctgcaaaaaatatttcaatgtttctcataacagtggctgcagcaaactacactgtagtgaactatggaaagcctaat |
31760097 |
T |
|
| Q |
101 |
taaacnnnnnnnnnnttaatcagaatatactaggtacttttcaaaagatttcaagcatgtaaacaagaaatcagaattctagtgatctacatgtataaat |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31760098 |
taaacaaaaaaaaa-ttaatcagaatatactaggtacttttcaaaagatttcaagcatgtaaacaagaaatcagtattctagtgatctacatgtataaat |
31760196 |
T |
|
| Q |
201 |
tgagaagctgatttgacttcaagaagcagcatttgaaacttctgaatgctctaggaac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31760197 |
tgagaagctgatttgacttcaagaagcagcatttgaaacttctgaatgctctaggaac |
31760254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University