View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_122 (Length: 270)
Name: NF17763_low_122
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 28282238 - 28281991
Alignment:
| Q |
6 |
agtgagatgaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagtactgaattttctcctgagc |
105 |
Q |
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| T |
28282238 |
agtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttatagaatcaactaatggcagtaccgaattttctcctgagc |
28282139 |
T |
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| Q |
106 |
atactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatgtttgcatgtgca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282138 |
atactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatgtttgcatgtgca |
28282039 |
T |
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| Q |
206 |
tttgcattattttcatttatcctacctgaattgaaagctagttacaaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282038 |
tttgcattattttcatttatcctacctgaattgaaagctagttacaaa |
28281991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 28290504 - 28290266
Alignment:
| Q |
14 |
gaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagtactgaattttctcctgagcatactctc |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
28290504 |
gaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata-aatcaactaatggcagtaccgaattttctcctgagcagactctc |
28290406 |
T |
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| Q |
114 |
cccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatgtttgcatgtgcatttgcatt |
213 |
Q |
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| T |
28290405 |
cccacatcagaaacacgaccccttccttcttctcagagatcgtcttgataacaacatctgtgaattgttcccagcctatatttgcatgtgaatttaaatt |
28290306 |
T |
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| Q |
214 |
attttcatttatcctacctgaattgaaagctagttacaaa |
253 |
Q |
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| T |
28290305 |
atcttcattcttcctacctgaattgaaagctagttacaaa |
28290266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 29558598 - 29558736
Alignment:
| Q |
94 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatg |
193 |
Q |
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||||||||||||| ||||| ||||| ||||||||| | | || |||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
29558598 |
tttctcctgagcagactctgcccactgcagaaacatgacactatctttcttctctgagattgtcttgataacagaatccgtaaattgttcccagcctata |
29558697 |
T |
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| Q |
194 |
tttgcatgtgcatttgcattattttcatttatcctacct |
232 |
Q |
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||||||||| |||||||||||| |||||| |||||||| |
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| T |
29558698 |
tttgcatgtccatttgcattatcttcattcttcctacct |
29558736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 28303174 - 28303078
Alignment:
| Q |
94 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcct |
190 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||| |||||||||||||||||| |
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| T |
28303174 |
tttctcctgagcagactttccccacagcagaaacacaactccttccttcttctgtgagattgtcttgataacagtatcagtaaattgttcccagcct |
28303078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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