View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_13 (Length: 613)
Name: NF17763_low_13
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 35490972 - 35491427
Alignment:
| Q |
1 |
tcatggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490972 |
tcatggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttg |
35491071 |
T |
|
| Q |
101 |
tattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491072 |
tattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagaga |
35491171 |
T |
|
| Q |
201 |
aagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatatattacgttagtgtgtacatgt--cata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
35491172 |
aagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcagtatattacgttagtgtgtacatgtcccata |
35491271 |
T |
|
| Q |
299 |
caagggacaaatttatgtttttattagtatttatatgttcattttaaaatattgtatgaaatatattagtgtgtactgatgcaatgcaatatattattgg |
398 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491272 |
caagggacaattttatgtttttattagtatttatatgttcattttaaagtattgtatgaaatatattagtgtgtactgatgcaatgcaatatattattgg |
35491371 |
T |
|
| Q |
399 |
caattatatgatgaagatttcactaattttttgttttccataagcttatagtaatg |
454 |
Q |
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| T |
35491372 |
caattatatgatgaagatttcactaattttttgttttccataagcttataataatg |
35491427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 155 - 448
Target Start/End: Original strand, 35497344 - 35497652
Alignment:
| Q |
155 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35497344 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
35497443 |
T |
|
| Q |
255 |
gtttatgagcatgcaatatattacgttagtgtgtacatgt------catacaagggacaaatttatgtttttattagtatttatatg----ttcatttta |
344 |
Q |
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| T |
35497444 |
gtttatgagcatgcaatatattataaaagtgtgtacatgtgccatccatgcacatgacaaatctatgtttttaatattatttatatgtttattaatttta |
35497543 |
T |
|
| Q |
345 |
aaatattg------tatgaaatatattagtgtgtactgatgcaatgcaatatattattggcaattatatgatgaagatttcactaattttttgttttcca |
438 |
Q |
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|| ||||| ||||||||||| |||||| |||| |||| ||||||| || |||||||||||||||||||||||||| ||||||||||| |||| | |
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| T |
35497544 |
aagtattgtatgaatatgaaatatactagtgtctactaatgccatgcaat-tactattggcaattatatgatgaagattttactaattttttatttttcc |
35497642 |
T |
|
| Q |
439 |
taagcttata |
448 |
Q |
| |
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|| ||||||| |
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| T |
35497643 |
tatgcttata |
35497652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 35504028 - 35504194
Alignment:
| Q |
108 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
207 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||| | | ||||||| ||| |||||||| ||||| ||| |||||| | |||||||||||||| |
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| T |
35504028 |
cagctataaagctgagtgatgaaggggaaatattagaagtcctggaagattgtgaagggaagaccttgaagttcatcagtgaaattgaagagaaagatgg |
35504127 |
T |
|
| Q |
208 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatata |
274 |
Q |
| |
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|||||||||||| ||||| | ||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
35504128 |
aaaactttggatggcatcagtgttaatgccttatattggtgtttataatttatgagaatgcaatata |
35504194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 108 - 273
Target Start/End: Original strand, 35512660 - 35512825
Alignment:
| Q |
108 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
207 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||| | |||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
35512660 |
cagctataaagctgagtgatgaaggggaaataatagaaagtctggaagatcgtgaagggaagaccttgaagttcatcagtgaagtggaagagaaagatgg |
35512759 |
T |
|
| Q |
208 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatat |
273 |
Q |
| |
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|||||||||||| || || | ||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
35512760 |
aaaactttggatggcctctgtcttaatgccttatattggtgtttatagtttatgagaatgcaatat |
35512825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 35512466 - 35512543
Alignment:
| Q |
28 |
tacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttgtattc |
105 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||| |||| |
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| T |
35512466 |
tacttttgctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcattc |
35512543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 35503810 - 35503906
Alignment:
| Q |
4 |
tggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttg |
100 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| || ||||||||| ||||| |||||| |||||||||||||| | || || ||||||||||||||| |
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| T |
35503810 |
tggaccaaatgctggccaagtcgatacttttgctgttcttccaggctttccagacaatgtaaggagaaattcagaagggcaattttgggttgctttg |
35503906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 40161479 - 40161731
Alignment:
| Q |
1 |
tcatggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttg |
100 |
Q |
| |
|
|||||| || || |||||| |||||| |||||||| | ||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
40161479 |
tcatggccctaatgctggtcaagtcaatacttttgccgttcttccaggttatccggacaatataaggagaaattcagatgggcagttttgggttgctttg |
40161578 |
T |
|
| Q |
101 |
tattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagaga |
200 |
Q |
| |
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|| ||||| ||||| ||||||||||||| ||||||||||||| | | ||| |||||||||||| | ||||||||| ||| |||| |
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| T |
40161579 |
cataatgcagctataaagttgagtgatgaaggggaaatattagaaa---------ttgtggaagggaagaccatgagatatgttagtgaagcggatgaga |
40161669 |
T |
|
| Q |
201 |
aagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatga |
262 |
Q |
| |
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||||||| ||||||| ||||| ||| | ||| ||||||||||||| |||||||||||||| |
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| T |
40161670 |
aagatggtaaacttttgattggatcagtgttaatgccttatattggtatttatagtttatga |
40161731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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