View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_131 (Length: 263)

Name: NF17763_low_131
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_131
NF17763_low_131
[»] chr4 (4 HSPs)
chr4 (18-247)||(6136102-6136331)
chr4 (18-137)||(2946660-2946779)
chr4 (30-137)||(17405129-17405236)
chr4 (142-247)||(2946929-2947034)
[»] chr6 (3 HSPs)
chr6 (18-247)||(27991394-27991620)
chr6 (142-247)||(20726159-20726264)
chr6 (30-84)||(13627842-13627896)
[»] chr3 (3 HSPs)
chr3 (27-137)||(9021761-9021871)
chr3 (142-247)||(9021529-9021634)
chr3 (41-97)||(25226627-25226683)
[»] chr5 (7 HSPs)
chr5 (18-132)||(15023557-15023671)
chr5 (18-115)||(21788233-21788330)
chr5 (18-137)||(21714319-21714438)
chr5 (18-137)||(13502425-13502544)
chr5 (142-196)||(21714587-21714641)
chr5 (142-196)||(21788502-21788556)
chr5 (41-93)||(16988342-16988394)
[»] chr2 (14 HSPs)
chr2 (20-137)||(17628324-17628441)
chr2 (18-137)||(17673395-17673514)
chr2 (25-133)||(1644617-1644725)
chr2 (18-134)||(19569582-19569698)
chr2 (25-137)||(37081308-37081420)
chr2 (36-121)||(3563566-3563651)
chr2 (142-205)||(17628113-17628176)
chr2 (142-205)||(17673183-17673246)
chr2 (73-134)||(24578681-24578742)
chr2 (142-227)||(37081050-37081135)
chr2 (178-245)||(3564445-3564512)
chr2 (142-229)||(24578895-24578981)
chr2 (142-226)||(1644879-1644963)
chr2 (142-173)||(3563811-3563842)
[»] chr1 (7 HSPs)
chr1 (18-137)||(28538506-28538625)
chr1 (18-121)||(27908301-27908404)
chr1 (25-103)||(23971056-23971134)
chr1 (18-121)||(2900411-2900511)
chr1 (142-247)||(28538766-28538872)
chr1 (147-247)||(27908580-27908680)
chr1 (142-247)||(2900675-2900779)
[»] chr8 (8 HSPs)
chr8 (30-131)||(19442403-19442504)
chr8 (30-131)||(19578554-19578655)
chr8 (142-247)||(15151756-15151861)
chr8 (30-137)||(15151320-15151427)
chr8 (30-103)||(16822010-16822083)
chr8 (142-247)||(19442628-19442732)
chr8 (142-247)||(19578779-19578883)
chr8 (41-93)||(16054807-16054859)
[»] chr7 (5 HSPs)
chr7 (142-223)||(4633497-4633578)
chr7 (25-108)||(4633993-4634076)
chr7 (30-102)||(32238915-32238987)
chr7 (151-247)||(22763782-22763879)
chr7 (41-120)||(22384190-22384269)
[»] scaffold0010 (1 HSPs)
scaffold0010 (41-97)||(235746-235802)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 6136102 - 6136331
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6136102 atgaatggaaagactattaaacatttcatttgatattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagctaggatcc 6136201  T
Q  118 atgtgccagagtctaggcttatgcaattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6136202 atgtgccagagtctaggcttatgcaattgtttggcaattgcaattggcacctactcatatcttatgaagttatgatcaatgatatatgacacttgtgctt 6136301  T
Q  218 ttggcaattgattttacttgtgttaatagt 247  Q
    |||||||||||||||| |||||||||||||    
T  6136302 ttggcaattgattttatttgtgttaatagt 6136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 2946660 - 2946779
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||  || ||||     
T  2946660 atgaatggaaagactatttaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgcgagccaattagctctaaactatgatct 2946759  T
Q  118 atgtgccagagtctaggctt 137  Q
    |||| | |||||||||||||    
T  2946760 atgttctagagtctaggctt 2946779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 17405236 - 17405129
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||| |||||||||||||| |||||||||||| ||| | |    
T  17405236 actattaaacatttcatttgacattgtgcaagaagaacacaagtatgaattttttaagtgtgaaccaattagctctaaggtaggatccatgttccaaaat 17405137  T
Q  130 ctaggctt 137  Q
    ||||||||    
T  17405136 ctaggctt 17405129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 2946929 - 2947034
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    |||||||||||||||||||||| ||||||||  || ||| ||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||    
T  2946929 aattgtttggcaattgcaattgacacctacttctatcttgtgaagttatgatcaatggtatatgacacttatgcttttggcaattgattgttcttgtgtt 2947028  T
Q  242 aatagt 247  Q
    ||||||    
T  2947029 aatagt 2947034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 27991620 - 27991394
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| ||||||||||||||||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||  ||| ||      
T  27991620 atgaatggaaagactattaaacatttcattttacattatgcaaaaagaacacaagtatgaatcattgaaatgtgaatcaattagctctaaactagaattt 27991521  T
Q  118 atgtgccagagtctaggcttatgcaattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgctt 217  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    | ||||||| |||||    
T  27991520 atgttccagagtataggcttatgcaattgtttggcaattgcaattggcacctactcatatcttatg-agttatgatcaatg--gcacgacacttatgctt 27991424  T
Q  218 ttggcaattgattttacttgtgttaatagt 247  Q
    |||||||||||||||| |||||||||||||    
T  27991423 ttggcaattgattttatttgtgttaatagt 27991394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 20726264 - 20726159
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    |||| ||||| ||||||||||||||| || || || ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| | ||||||||    
T  20726264 aattatttggtaattgcaattggcacatattcctatcttatgaagttatgatcaatgttatacgacacttatgcttttgacaattgattgttcttgtgtt 20726165  T
Q  242 aatagt 247  Q
    ||||||    
T  20726164 aatagt 20726159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 13627842 - 13627896
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttg 84  Q
    |||||||||||||| |||||||||| |||||||| ||||||  ||||||||||||    
T  13627842 actattaaacattttatttgacattatgcaagaaaaacacaaatatgaatctttg 13627896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 9021871 - 9021761
Alignment:
Q  27 aaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||  |||||||| ||||    
T  9021871 aaaactattaaacatttcatttgacattgtgcaagaagaacacaagtatgaatctttgaaatgtaaaccaattagctctaagctataatccatgttccag 9021772  T
Q  127 agtctaggctt 137  Q
    |||||||||||    
T  9021771 agtctaggctt 9021761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 9021634 - 9021529
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||  |||||||  ||||   ||||| |||||||| ||||||||| | |||||| |    
T  9021634 aattgtttggcaattgcaattggcgcctactcctatcttatgaagttgcgatcaatcgtatacatcacttatgcttttgacaattgattgttcttgtgct 9021535  T
Q  242 aatagt 247  Q
    ||||||    
T  9021534 aatagt 9021529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 25226627 - 25226683
Alignment:
Q  41 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaa 97  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  25226627 tttcatttgacattgtgcaaaaagaacacgagtatgaatctttgaaatgtgaatcaa 25226683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 15023671 - 15023557
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||  ||||||||    
T  15023671 atgaatggaaagactattaaacatttcatttgacattgtacaaaaagaacacaagtatgaatttttgaaatgtgaatcaattagctctaaactaggatcc 15023572  T
Q  118 atgtgccagagtcta 132  Q
    |||||||| ||||||    
T  15023571 atgtgccaaagtcta 15023557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21788233 - 21788330
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggat 115  Q
    |||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||    
T  21788233 atgaatcgaaaaactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaagttaggat 21788330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 21714319 - 21714438
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| ||||||||| ||||||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||      
T  21714319 atgaatcgaaagactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaagttaggatat 21714418  T
Q  118 atgtgccagagtctaggctt 137  Q
     ||| ||| |||||||||||    
T  21714419 gtgttccaaagtctaggctt 21714438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 13502544 - 13502425
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| ||||  |||||||| |||| ||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||      
T  13502544 atgaatcgaaaggctattaaatattttattcgatattgtgcaagaagaacacaagtatgaatatttgaaatgtgaatcaattagccctaagctaggatat 13502445  T
Q  118 atgtgccagagtctaggctt 137  Q
     ||| ||| |||||||||||    
T  13502444 gtgttccaaagtctaggctt 13502425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 21714587 - 21714641
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaa 196  Q
    |||| ||||||||||||||||||||||||||  || |||||||||||||||||||    
T  21714587 aattctttggcaattgcaattggcacctacttctatcttatgaagttatgatcaa 21714641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 21788502 - 21788556
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaa 196  Q
    |||| ||||||||||||||||||||||||||  || |||||||||||||||||||    
T  21788502 aattctttggcaattgcaattggcacctacttctatcttatgaagttatgatcaa 21788556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 16988342 - 16988394
Alignment:
Q  41 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaa 93  Q
    ||||||||||  |||||||| ||||||||  ||||| ||||||||||||||||    
T  16988342 tttcatttgatgttgtgcaaaaagaacacgagtatggatctttgaaatgtgaa 16988394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 17628441 - 17628324
Alignment:
Q  20 gaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccat 119  Q
    |||| |||| ||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||    
T  17628441 gaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgtgaatcaattagctctaagctaggatccat 17628342  T
Q  120 gtgccagagtctaggctt 137  Q
    || | |||||||| ||||    
T  17628341 gttcaagagtctatgctt 17628324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 17673514 - 17673395
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| ||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||    
T  17673514 atgaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgtgaaccaattagctctaagctaggatcc 17673415  T
Q  118 atgtgccagagtctaggctt 137  Q
    |||| | |||||||| ||||    
T  17673414 atgttcaagagtctatgctt 17673395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 1644617 - 1644725
Alignment:
Q  25 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgcc 124  Q
    |||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||  ||||||||||||| ||||||||||||  |    
T  1644617 gaaagactattaaacatttcatttgacattgtgcaagaagagcataggtatgaatctttgaaatgtgaacaaattagctctaagctaggatccatgtttc 1644716  T
Q  125 agagtctag 133  Q
    |||||||||    
T  1644717 agagtctag 1644725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19569582 - 19569698
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||| |||||| | || ||||||||| ||||||||    
T  19569582 atgaatggaaagactattaaacatttcatttgacattgtgcaagaaaaacacaaatatgaatttttgaattgtgaaccgatgagctctaagctaggatcc 19569681  T
Q  118 atgtgccagagtctagg 134  Q
    |||| | | ||||||||    
T  19569682 atgttcgaaagtctagg 19569698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 37081420 - 37081308
Alignment:
Q  25 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgcc 124  Q
    |||| ||||| |||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||  ||||||  ||    
T  37081420 gaaagactatcaaacattttattttatattgtgcaagaagaacacaagtatgaatctttgaaatgtgaaccgattagctctaagttagagtccatgatcc 37081321  T
Q  125 agagtctaggctt 137  Q
     ||||||||||||    
T  37081320 ggagtctaggctt 37081308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 3563566 - 3563651
Alignment:
Q  36 aaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgt 121  Q
    |||||||||||| |||||| | |||||||| |||| ||||||||||||||||| | || |||||||||||||| ||||||||||||    
T  3563566 aaacatttcattcgacattttacaagaagagcacaagtatgaatctttgaaatataaaccaattagctctaagctaggatccatgt 3563651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 17628176 - 17628113
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatg 205  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||    
T  17628176 aattgtttggcaattgcaattggcacatactcctatcttatgaagttatgatcaatggtatatg 17628113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 17673246 - 17673183
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatg 205  Q
    ||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||| ||||||    
T  17673246 aattgtttgccaattgcaattggcacatactcctatcttatgaagttatgatcaatggtatatg 17673183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 24578681 - 24578742
Alignment:
Q  73 tatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagtctagg 134  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||||||| ||||||||||||    
T  24578681 tatgaatctttgaaatgtgaaataattagctctaagctagaatccatgttccagagtctagg 24578742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 37081135 - 37081050
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattg 227  Q
    ||||||||| ||||||||||||||||||| |||||  | |||||||| |||||||||||||  | ||||| ||||||| |||||||    
T  37081135 aattgtttgccaattgcaattggcacctagtcatatttaatgaagttgtgatcaatgatatgcggcacttatgcttttagcaattg 37081050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 3564445 - 3564512
Alignment:
Q  178 cttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgttaata 245  Q
    ||||||||||||||||||||| ||||  |||||| || ||||||||||||||| | ||||||||||||    
T  3564445 cttatgaagttatgatcaatggtatacaacacttatgtttttggcaattgattgttcttgtgttaata 3564512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 24578895 - 24578981
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgat 229  Q
    |||||||||||||||||||  ||||||||||| || |||||| |||||||||||||| |||| |  |||| |||| ||||||||||||    
T  24578895 aattgtttggcaattgcaacgggcacctactcctatcttatg-agttatgatcaatggtataaggtacttatgctcttggcaattgat 24578981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 1644879 - 1644963
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaatt 226  Q
    ||||||||| |||||||||||| ||| ||||| || ||||||||| ||| ||||||| |||| ||||| | |||| |||||||||    
T  1644879 aattgtttgacaattgcaattgacacatactcctatcttatgaagatataatcaatggtatacgacacctatgctcttggcaatt 1644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 3563811 - 3563842
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactc 173  Q
    ||||||||||||||||||||||||||||||||    
T  3563811 aattgtttggcaattgcaattggcacctactc 3563842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 28538506 - 28538625
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| | ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||    
T  28538506 atgaatggaaagattatgaaacatttcatttgacattgtgctagaagaacacaagtatgaatctttgaaatgtgaaccaattaactctaagctaggatcc 28538605  T
Q  118 atgtgccagagtctaggctt 137  Q
    |||| |  ||||||||||||    
T  28538606 atgttcaggagtctaggctt 28538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 27908301 - 27908404
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| | || |||| ||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||    
T  27908301 atgaatggaaagattaataaatatttcatttcacattgtgcaacaagaacacaagtatgaatatttgaaatgtgaaccaattagctctaagctaggatcc 27908400  T
Q  118 atgt 121  Q
    ||||    
T  27908401 atgt 27908404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 23971134 - 23971056
Alignment:
Q  25 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagct 103  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  23971134 gaaagactattaaacatttcatttgacattgtgcaagaaaaacacaagtatgaatctttgaagtgtgaaccaattagct 23971056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 2900411 - 2900511
Alignment:
Q  18 atgaatagaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatcc 117  Q
    |||||| |||| |||||||||||||||||||||||||||||   ||||||||| |||| |||||||||||||  || |||||||||||||| ||||||||    
T  2900411 atgaatggaaagactattaaacatttcatttgacattgtgc---aagaacacaagtataaatctttgaaatgacaaccaattagctctaagctaggatcc 2900507  T
Q  118 atgt 121  Q
    ||||    
T  2900508 atgt 2900511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 28538766 - 28538872
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaat-gatatatgacacttgtgcttttggcaattgattttacttgtgt 240  Q
    ||||||||||||||||||||| |||||| ||| ||  ||||||||||||||||||| | |||||||||||| |||||| || |||||||| | | |||||    
T  28538766 aattgtttggcaattgcaattagcaccttctcctattttatgaagttatgatcaatgggtatatgacacttatgctttcggtaattgattattcctgtgt 28538865  T
Q  241 taatagt 247  Q
    |||||||    
T  28538866 taatagt 28538872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 27908580 - 27908680
Alignment:
Q  147 tttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgttaatag 246  Q
    ||||||||||||| ||||||| ||||  ||  ||||||||||||| |||||| |||| ||||||| |||||||||||||| ||| | |||||||||||||    
T  27908580 tttggcaattgcagttggcacatacttctattttatgaagttatggtcaatggtatacgacacttatgcttttggcaattaattgttcttgtgttaatag 27908679  T
Q  247 t 247  Q
    |    
T  27908680 t 27908680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 2900675 - 2900779
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    |||||||||||| ||||| ||| ||| ||||| || ||||||||||||||||||||| |||| |||| || ||||||||| |||||||| | || |||||    
T  2900675 aattgtttggca-ttgcagttgacacgtactcttatcttatgaagttatgatcaatggtatacgacatttatgcttttggaaattgattgttctcgtgtt 2900773  T
Q  242 aatagt 247  Q
    ||||||    
T  2900774 aatagt 2900779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 19442403 - 19442504
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 129  Q
    ||||||||||||||||||||| ||||||| | | ||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||    
T  19442403 actattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtgaaacaaatagctctaagttagaatccatgttccagagt 19442502  T
Q  130 ct 131  Q
    ||    
T  19442503 ct 19442504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 19578554 - 19578655
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 129  Q
    ||||||||||||||||||||| ||||||| | | ||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||    
T  19578554 actattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtgaaacaaatagctctaagttagaatccatgttccagagt 19578653  T
Q  130 ct 131  Q
    ||    
T  19578654 ct 19578655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 15151756 - 15151861
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    ||||||||| ||||||||||||||||||||||  | |||||||||||||||| |||| |||| ||||||| ||||||||||||||| ||   ||||||||    
T  15151756 aattgtttgacaattgcaattggcacctactccaatcttatgaagttatgatgaatggtatacgacacttatgcttttggcaattggttgctcttgtgtt 15151855  T
Q  242 aatagt 247  Q
    ||||||    
T  15151856 aatagt 15151861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 15151320 - 15151427
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatgtgccagagt 129  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||| |||||||  |||| |||||||| |||||||||| | ||||| |    
T  15151320 actattaaacatttcatttgacattatgcaagaagaacacaagtataaatcattgatatgtgaacgaattggctctaagctaggatccatattccagaat 15151419  T
Q  130 ctaggctt 137  Q
    ||| ||||    
T  15151420 ctatgctt 15151427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 16822010 - 16822083
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagct 103  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||| |||||| |||||||||    
T  16822010 actattaaacatttcatttgacattgtacaagaaaaacacaagtatgaatcattgaagtgtgaaccaattagct 16822083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 19442628 - 19442732
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    |||||||||| ||||||||||||||||||||| ||  |||||| ||||||||||||| |||| | ||||| |||| ||||||||||||  | ||||||||    
T  19442628 aattgtttggaaattgcaattggcacctactcctatattatga-gttatgatcaatggtataaggcacttatgctcttggcaattgatcgttcttgtgtt 19442726  T
Q  242 aatagt 247  Q
    ||||||    
T  19442727 aatagt 19442732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 19578779 - 19578883
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttacttgtgtt 241  Q
    |||||||||| ||||||||||||||||||||| ||  |||||| ||||||||||||| |||| | ||||| |||| ||||||||||||  | ||||||||    
T  19578779 aattgtttggaaattgcaattggcacctactcctatattatga-gttatgatcaatggtataaggcacttatgctcttggcaattgatcgttcttgtgtt 19578877  T
Q  242 aatagt 247  Q
    ||||||    
T  19578878 aatagt 19578883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 16054859 - 16054807
Alignment:
Q  41 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaa 93  Q
    |||||||||| ||||||||| ||||||||  ||||| ||||||||||||||||    
T  16054859 tttcatttgagattgtgcaaaaagaacacgagtatggatctttgaaatgtgaa 16054807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 4633578 - 4633497
Alignment:
Q  142 aattgtttggcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacacttgtgcttttggca 223  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||  |||||| || ||||||||    
T  4633578 aattgtttggtaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggca 4633497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 4634076 - 4633993
Alignment:
Q  25 gaaaaactattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaag 108  Q
    |||| ||||||||||||||||| ||||||| |||||||| || |||  ||||||||||||||||||||| ||||| ||| ||||    
T  4634076 gaaagactattaaacatttcatatgacattatgcaagaaaaatacaaatatgaatctttgaaatgtgaaccaattggctataag 4633993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 32238987 - 32238915
Alignment:
Q  30 actattaaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagc 102  Q
    ||||||||| ||||||||||||||||||||| || ||| || |||||||||||| || ||||||  |||||||    
T  32238987 actattaaatatttcatttgacattgtgcaacaaaaacgcaagtatgaatctttaaagtgtgaactaattagc 32238915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 22763782 - 22763879
Alignment:
Q  151 gcaattgcaattggcacctactcataccttatgaagttatgatcaatgatatatgacactt-gtgcttttggcaattgattttacttgtgttaatagt 247  Q
    |||||||||||||  |||||||  || ||||||||||||||||||||| |||| |  ||||  |||||| |||||||| || | ||||||||||||||    
T  22763782 gcaattgcaattgatacctactgctatcttatgaagttatgatcaatgttatacggtacttaatgctttaggcaattggttgttcttgtgttaatagt 22763879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 22384269 - 22384190
Alignment:
Q  41 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagttaggatccatg 120  Q
    ||||| |||||||||||||| |||||||   |||||| ||||| ||||||||||||| | | |||||  |||||||||||    
T  22384269 tttcagttgacattgtgcaaaaagaacatgagtatgagtctttaaaatgtgaatcaagtggttctaatataggatccatg 22384190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 235802 - 235746
Alignment:
Q  41 tttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaa 97  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  235802 tttcatttgacattgtgcaaaaagaacatgagtatgaatctttgaaatgtgaatcaa 235746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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