View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_138 (Length: 254)
Name: NF17763_low_138
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_138 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 38441504 - 38441296
Alignment:
| Q |
20 |
gagctacatgttataatttctaagttaaagtcaacgcttcgtcnnnnnnnnnnnnnnnncagtttaaatcaatgctagaggtaaagtggagtaatattga |
119 |
Q |
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| T |
38441504 |
gagctacatgttataatttctaagttaaagtcaacgcttcgtcaaaaaaaaaaaa----cagtttaaatcaatgctagaggtaaagtggagtaatattga |
38441409 |
T |
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| Q |
120 |
aaggtagaagactgcatataaactactcgaatctatcatcattaatcatgtccacatgcatatatactttatataaatttaaggaaaatgattacaagcc |
219 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |
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| T |
38441408 |
aaggtagaacactgcatataaactactcaaatctatcatcattaatcatgtccacatgc----atactttatataaatgtaaggaaaatcattacaagcc |
38441313 |
T |
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| Q |
220 |
caatcaaaaggattctg |
236 |
Q |
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||||||||||||||||| |
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| T |
38441312 |
caatcaaaaggattctg |
38441296 |
T |
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