View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_141 (Length: 254)
Name: NF17763_low_141
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_141 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2488201 - 2488445
Alignment:
| Q |
1 |
gagaccaaactgtcatcattcatacttttggacattgttctcgcttctgattccttgtatccttcaatattcctttagctcctgggaaacacataaccag |
100 |
Q |
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| T |
2488201 |
gagaccaaactgtcatcattcatacttttggacattgttctcgcttctgattccttgtatccttcaatattccttcagctcctgggaaacacataaccgg |
2488300 |
T |
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| Q |
101 |
ctggccttttgatgagaagattcttatacagactctttacaaggtattgtcacttttgatagtatcacagatttcagcatcagcacataaacgtgttttg |
200 |
Q |
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| T |
2488301 |
ctggccttttgatgagaagattcttatacagactctttacaaggtattgtcacttttgatagtatcacagatttcagcatcagcacataaatgtgttttg |
2488400 |
T |
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| Q |
201 |
gatagtaaggctatacatctcaacaaaagacattgatttgatgat |
245 |
Q |
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| T |
2488401 |
gatagtaaggctatacatctcaacaaaagacattgatttgatgat |
2488445 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 41592878 - 41592829
Alignment:
| Q |
97 |
ccagctggccttttgatgagaagattcttatacagactctttacaaggta |
146 |
Q |
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| T |
41592878 |
ccagctggtcttttgatgaaaaacttcttatacagtctctttacaaggta |
41592829 |
T |
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