View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_145 (Length: 251)
Name: NF17763_low_145
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_145 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 33789628 - 33789878
Alignment:
| Q |
1 |
tactatccaagaattatctaccctgtagatttccatttccaatataatataaaagtaatgtaagttcaaaagattccacaaaaagggagaacaagaaata |
100 |
Q |
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| T |
33789628 |
tactatccaagaattatctaccctgtagatttccatttccaatataatataaaagtaatgtaagttcaaaagattccacaaaaagggagaactcgaaatg |
33789727 |
T |
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| Q |
101 |
aaatgaattgcaatctatgaagcaccgacacagacaccaggtgcgacaccgacacctcagcaccataaataacatgagaaaatagaataacggaatataa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33789728 |
aaatgaattgcaacctatgaagcaccgacacagacaccaggtgcaacaccgacacctcagcaccataaataacatgagaaaatagaatagcggaatataa |
33789827 |
T |
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| Q |
201 |
ccacatgtgtcggtctcgtgttggtgtccaacactgacacgtcttggacac |
251 |
Q |
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| T |
33789828 |
ccacatgtgtcggtctcgtgttggtgtccaacactgacacatcttggacac |
33789878 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 31572677 - 31572629
Alignment:
| Q |
194 |
aatataaccacatgtgtcggtctcgtgttggtgtccaacactgacacgt |
242 |
Q |
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||||||| ||||||||||||| | ||||||||||| |||||| |||||| |
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| T |
31572677 |
aatataatcacatgtgtcggtgttgtgttggtgtcaaacacttacacgt |
31572629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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