View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_154 (Length: 240)

Name: NF17763_low_154
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_154
NF17763_low_154
[»] chr4 (2 HSPs)
chr4 (1-222)||(39090334-39090555)
chr4 (13-221)||(39080973-39081178)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39090555 - 39090334
Alignment:
Q  1 atagagcaaagtcttggaaacctctcctgcaaaataattgaatttccagcccatctttgagaccaaaacaatgtcgtctaaccattaccaatcctacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39090555 atagagcaaagtcttggaaacctctcctgcaaaataattgaatttccagcccatctttgagaccaaaacaatgtcgtctaaccattaccaatcctacaaa 39090456  T
Q  101 ccaccggattagagaacaaattagtgctggctgggtgagcagtgtcaattaacttcaaaccatgccactaaattgaatccctgctacttgatgtaattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39090455 ccaccggattagagaacaaattagtgctggctgggtgagcagtgtcaattaacttcaaaccatgccactaaattgaatccctgctacttgatgtaattga 39090356  T
Q  201 atcaagaagataatgtatatgg 222  Q
    ||||||||||||||||||||||    
T  39090355 atcaagaagataatgtatatgg 39090334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 39081178 - 39080973
Alignment:
Q  13 cttggaaacctctcctgcaaaataattgaatttccagcccatctttgagaccaaaacaatgtcgtctaaccattaccaatcctacaaaccaccggattag 112  Q
    |||||||| || ||||||||||||   |||||| ||||||| || |||||||||||||||||||||| |||||| |||||||||  |||||||| |||||    
T  39081178 cttggaaatctgtcctgcaaaata---gaattttcagcccacctatgagaccaaaacaatgtcgtctcaccattgccaatcctatgaaccaccgaattag 39081082  T
Q  113 agaacaaattagtgctggctgggtgagcagtgtcaattaacttcaaaccatgccactaaattgaatccctgctacttgatgtaattgaatcaagaagata 212  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||  ||||||||    
T  39081081 agaacatattagtgcaggctgggtgagcagagtcaattaacttcaaatcatgccaccaaattgaatccatgctacttgatgtaattgaatatagaagata 39080982  T
Q  213 atgtatatg 221  Q
    |||||||||    
T  39080981 atgtatatg 39080973  T

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