View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_156 (Length: 238)
Name: NF17763_low_156
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_156 |
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| [»] scaffold0911 (2 HSPs) |
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| [»] scaffold0196 (3 HSPs) |
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Alignment Details
Target: scaffold0911 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 2574 - 2713
Alignment:
| Q |
114 |
ttggcagctctatcattcaagcaatgtttcgaaaatccaatgctattccaataccaagaa---------------caaatcttcagttctgccataaaaa |
198 |
Q |
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| T |
2574 |
ttggcagctctaacattcaagcaatatttcgaaaatccaatgctattccaataccaagaaggaacactttcaaaacaaatcttcggttccgccataaaaa |
2673 |
T |
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| Q |
199 |
atggtttatgagacagagatatatttctcaaggcaatttt |
238 |
Q |
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| T |
2674 |
atggtttatgagacagagataaatttctcaaggcaatttt |
2713 |
T |
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Target: scaffold0911; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 2448 - 2520
Alignment:
| Q |
17 |
aaccaactctatcacgatagaaatcaagacgtaactccgtaaggagcgtatccaaccaaactgaactcgtaac |
89 |
Q |
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| T |
2448 |
aaccaactctatcacgatagaaatcaaggcgtaactccgtcaggagcgtatccaaccaaactgaactcgtaac |
2520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 656 - 567
Alignment:
| Q |
17 |
aaccaactctatcacgatagaaatcaagacgtaactccgtaaggagcgtatccaaccaaactgaactcgtaacaacatgccccatattcgc |
107 |
Q |
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| T |
656 |
aaccaactctatcacgactgaaatcaaggcgtaactccgtcgggagtg-atccaaccaaactgaacccgtaacaacatgccccatattcgc |
567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 442 - 376
Alignment:
| Q |
172 |
aacaaatcttcagttctgccataaaaaatggtttatgagacagagatatatttctcaaggcaatttt |
238 |
Q |
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| T |
442 |
aacaaatcttcggttccgccataaaaaatggtttatgagacagagataaatttctcaaggaaatttt |
376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 520 - 456
Alignment:
| Q |
107 |
cataaatttggcagctctatcattcaagcaatgtttcgaaaatccaatgctattccaataccaagaa |
173 |
Q |
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| T |
520 |
cataaatttggcaacactaacactcaa--aatatttcgaaattccaatgctattccaataccaagaa |
456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 29233227 - 29233162
Alignment:
| Q |
17 |
aaccaactctatcacgatagaaatcaagacgtaactccgtaaggagcgtatccaaccaaactgaac |
82 |
Q |
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| T |
29233227 |
aaccaactctatcacgaaagaaatcaagatgtaactctatcgggagcgtatctaaccaaactgaac |
29233162 |
T |
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