View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_16 (Length: 576)

Name: NF17763_low_16
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_16
NF17763_low_16
[»] chr7 (2 HSPs)
chr7 (81-188)||(37031503-37031610)
chr7 (256-344)||(37031347-37031435)
[»] chr4 (2 HSPs)
chr4 (130-188)||(44843072-44843130)
chr4 (257-310)||(44842949-44843007)
[»] chr5 (1 HSPs)
chr5 (256-289)||(20465469-20465502)
[»] chr8 (1 HSPs)
chr8 (510-563)||(29441756-29441809)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 37031610 - 37031503
Alignment:
Q  81 tgaaagctggaaatttcgttggttttgggtttcagttttaatgtattttggtcttgtatgatgaatttttctttcaatttctaagtggtagttttagttt 180  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37031610 tgaaagctaaaaatttcattggttttgggtttcagttttaatgtattttggtcttgtatgatgaatttttctttcaatttctaagtggtagttttagttt 37031511  T
Q  181 gctgaaac 188  Q
    ||||||||    
T  37031510 gctgaaac 37031503  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 37031435 - 37031347
Alignment:
Q  256 cgttgaagattagtaggttttataaaatataaaattgtatattgagcattaaataaagggtatttttgtctattaaaaagtaaacacaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37031435 cgttgaagattagtaggttttataaaatataaaattgtatattgagcattaaataaagggtatttttgtctattaaaaagtaaacacaa 37031347  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 44843130 - 44843072
Alignment:
Q  130 ggtcttgtatgatgaatttttctttcaatttctaagtggtagttttagtttgctgaaac 188  Q
    |||||||||  |||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  44843130 ggtcttgtacaatgaatttttctttcaatttcttagtggtggttttagattgctgaaac 44843072  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 44843007 - 44842949
Alignment:
Q  257 gttgaagattagtaggttttataaaatataaaa-----ttgtatattgagcattaaata 310  Q
    |||||||||||||||||||||||||||| ||||     ||||||||| |||||||||||    
T  44843007 gttgaagattagtaggttttataaaataaaaaaaaaatttgtatattaagcattaaata 44842949  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 20465469 - 20465502
Alignment:
Q  256 cgttgaagattagtaggttttataaaatataaaa 289  Q
    ||||||||||||||||||||||||||||||||||    
T  20465469 cgttgaagattagtaggttttataaaatataaaa 20465502  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 29441756 - 29441809
Alignment:
Q  510 agataaatgacctaaatattataaatatataagataaaagatcctcagtataat 563  Q
    ||||||||||||||||||||| ||||| ||||| ||| |||||| | |||||||    
T  29441756 agataaatgacctaaatattacaaataaataagttaacagatccccggtataat 29441809  T

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