View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_161 (Length: 227)
Name: NF17763_low_161
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_161 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 45549589 - 45549802
Alignment:
| Q |
14 |
ataattctgatactttgttgaattgacctactcacctttcccacttgaatcagtgtctttggtttgataattgggaagagtatatgcctcagttctactt |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549589 |
ataaatctgatactttgttgaattgacctactcacctttcccacttgaatcagcgtctttggtttgataattgggaagagtatatgcctcagttctactt |
45549688 |
T |
|
| Q |
114 |
ccttgatcttgagaatattcctccaaaatttcccagtttctattatctttggatgctgtttcactaggatattcattctgagtttttgttgcatcagaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549689 |
ccttgatcttgagaatattcctccaaaatttcccagtttctattatctttggatactgtttcactaggatattcattctgagtttttgttgcatcagaga |
45549788 |
T |
|
| Q |
214 |
agtgtggcacaaac |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45549789 |
agtgtggcacaaac |
45549802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 45544835 - 45545011
Alignment:
| Q |
54 |
ccacttgaatcagtgtctttggtttgataattgggaagagtatatgcctcagttctacttccttgatcttgagaatattcctccaaaatttcccagtttc |
153 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||| |||||||||||||| | || || |
|
|
| T |
45544835 |
ccacttggatcagtgtctttggtttgataattgggatggatataagtctcagttctacttccttgatcttgagaatcttcctccaaaattttctggtctc |
45544934 |
T |
|
| Q |
154 |
tat---tatctttggatgctgtttcactaggatattcattctgagtttttgttgcatcagagaagtgtggcacaaac |
227 |
Q |
| |
|
||| ||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45544935 |
tattgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcagtgaagtgtggcacaaac |
45545011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 45550837 - 45550945
Alignment:
| Q |
31 |
ttgaattgacctactcacctttcccacttgaatcagtgtctttggtttgataattgggaagagtatatgcctcagttctacttccttgatcttgagaata |
130 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
45550837 |
ttgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcggttctacttccttgttcttgagaatc |
45550936 |
T |
|
| Q |
131 |
ttcctccaa |
139 |
Q |
| |
|
||||||||| |
|
|
| T |
45550937 |
ttcctccaa |
45550945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 45545616 - 45545718
Alignment:
| Q |
37 |
tgacctactcacctttcccacttgaatcagtgtctttggtttgataattgggaagagtatatgcctcagttctacttccttgatcttgagaatattcctc |
136 |
Q |
| |
|
||||||||||||||| | || ||| || ||||||||||||||| ||| |||||| |||||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
45545616 |
tgacctactcaccttcctcatttggattagtgtctttggtttggtaagtgggaaaagtatatgcctcagctctacttccttgttcttgagaatcttcctc |
45545715 |
T |
|
| Q |
137 |
caa |
139 |
Q |
| |
|
||| |
|
|
| T |
45545716 |
caa |
45545718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 45550121 - 45550201
Alignment:
| Q |
25 |
actttgttgaattgacctactcacctttcccacttgaatcagtgtctttggtttgataattgggaagagtatatgcctcag |
105 |
Q |
| |
|
|||| ||||||||| | |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45550121 |
acttcgttgaattgtcttactcaccttccccacttggatcagtgtctttgatttgataattgggaagagtatatgcctcag |
45550201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 45544038 - 45544108
Alignment:
| Q |
157 |
tatctttggatgctgtttcactaggatattcattctgagtttttgttgcatcagagaagtgtggcacaaac |
227 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||| |||||||| || |||||||||| ||||| |
|
|
| T |
45544038 |
tatctgtggatgctgtttcccgaggatattcattctgagtttctgttgcattagcgaagtgtggcgcaaac |
45544108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 45548830 - 45548878
Alignment:
| Q |
179 |
aggatattcattctgagtttttgttgcatcagagaagtgtggcacaaac |
227 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
45548830 |
aggatattcattcggagtttctgttgcatcagagaggtgtggcacaaac |
45548878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University