View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_162 (Length: 227)
Name: NF17763_low_162
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_162 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 9339074 - 9339238
Alignment:
| Q |
17 |
tgtcagatcaaacaaagaattacttaatgaaccaaacaaatgctattttaggaatgacaattgtttcgtaacgcaactagagaaagtaaatggtgtcaat |
116 |
Q |
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| T |
9339074 |
tgtcagatcaaacaaagatttatttaatgaaccaaacaaatgctattttgggaatgacaattgtttcgtaacgcaactagagaaagaaaatggtgtcaat |
9339173 |
T |
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| Q |
117 |
aagggtcctgctcctgcataatctaaaggtaagtttcattgaaaccaagtttatagagaccaagt |
181 |
Q |
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| T |
9339174 |
aagggtcctgctcctgcataatctaaaggtaagtttcattgataccaagtttatagagaccaagt |
9339238 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 8683753 - 8683703
Alignment:
| Q |
158 |
aaaccaagtttatagagaccaagtccagtgaatgttacatatgcaactaca |
208 |
Q |
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| T |
8683753 |
aaaccaagttgatagagaccaagtccagcgaatgttacatatggaactaca |
8683703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 47579961 - 47579921
Alignment:
| Q |
158 |
aaaccaagtttatagagaccaagtccagtgaatgttacata |
198 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |
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| T |
47579961 |
aaaccaagatgatagagaccaagtccagtgaatgttacata |
47579921 |
T |
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