View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_163 (Length: 227)
Name: NF17763_low_163
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_163 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 27889783 - 27890003
Alignment:
| Q |
7 |
caagactcatattaagatcttctatactgttctttttatccttaatttcttccttcaatatctcaatttcatctttgaatgtctcttccatttgagtctg |
106 |
Q |
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| T |
27889783 |
caagactcatattaagatcttctatactgttttttttatccttaatttcttccttcaatatctcaatttcatctttgaatgtctcttccatttgagtctg |
27889882 |
T |
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| Q |
107 |
ttgttcaaacaatttacatacttccgtctttaactgtgctttttcgaagaagcttttttgttctgtatcggataaaacagattttaaatccttgatctca |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27889883 |
ttgttcaaacaatttacatacttccgtctttaaccgtgctttttcgaagaagcttttttgttctgtatcggataaaacagattttaaatccttgatctca |
27889982 |
T |
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| Q |
207 |
tgttctttatctgctacattt |
227 |
Q |
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||||||||||||||||||||| |
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| T |
27889983 |
tgttctttatctgctacattt |
27890003 |
T |
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