View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_169 (Length: 221)
Name: NF17763_low_169
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_169 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 13241563 - 13241645
Alignment:
| Q |
14 |
acagaagaagacgaaggactggtctgtccaattatttaaaccatatgaatatttttatatacagataatgaagcaaccaccac |
96 |
Q |
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| T |
13241563 |
acagaagaagacgaaggactggtctgtccaattatttaaaccatatgaatatttttatatacagataatgaagcaaccaccac |
13241645 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 13241720 - 13241755
Alignment:
| Q |
171 |
aactataggaaaaatacataatcaactatgcattgt |
206 |
Q |
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| T |
13241720 |
aactataggaaaaaaacataatcaactatgcattgt |
13241755 |
T |
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