View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_170 (Length: 216)
Name: NF17763_low_170
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_170 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 42208910 - 42209093
Alignment:
| Q |
15 |
aagaagaaaacaaaattggagttgaattcaatctttgaatatgaattttaagggcaatctagaaaaaccacnnnnnnnnnnnnnnncgtaacacctctcg |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42208910 |
aagaagaaaacaaa-ttggagttgaattcaatctttgaatatgaattttaagggcaatctagaaaaaccacaaaagaaagaaaaaacgtaacacctctcg |
42209008 |
T |
|
| Q |
115 |
cttcattagaataaggtaaaaataaagcaataagtgatctatgaccgatgcgtatagaaaaatatatgtcgggaaagagattact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42209009 |
cttcattagaataaggtaaaaataaagcaataagtgatttatgaccgatgcgtatagaaaaatatatgtcgggaaagagattact |
42209093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 42215926 - 42215979
Alignment:
| Q |
15 |
aagaagaaaacaaaattggagttgaattcaatctttgaatatgaattttaaggg |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42215926 |
aagaagaaaacaaaattggagttgaattcaatctttgaatatgaatttcaaggg |
42215979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University