View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_176 (Length: 206)
Name: NF17763_low_176
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_176 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 54426175 - 54426372
Alignment:
| Q |
1 |
caaataagccaatccaaacaggcataatactgaaacatttagcatgtaagtagtgatgtacatcatctgatgcttcacgttgctttgttttgtttcttcg |
100 |
Q |
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| T |
54426175 |
caaataagccaatccaaacaggcataatactgaaacatttagcatgtaagtagtgatgtacatcatctgatgcttcacgttgctttgttttgttttttcg |
54426274 |
T |
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| Q |
101 |
actttgggttggtttgaacttaaataattcaactgcatttcagatgtccaaatcttgaggtgttgtcaatcagaagctgccctcgtgttactgatgat |
198 |
Q |
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| T |
54426275 |
actttgggttggtttgaacttaaataattcaactgcatttcagatgtccaaatcttgaggtgttgtcaatcagaagctgccctcgtgttactgatgat |
54426372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 54429853 - 54429788
Alignment:
| Q |
130 |
caactgcatttcagatgtccaaatcttgaggtgttgtcaatcagaagctgccctcgtgttactgat |
195 |
Q |
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|||||| ||||||||||| ||||||||||| | |||||||||||||||| || ||| |||||||| |
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| T |
54429853 |
caactgtatttcagatgttcaaatcttgagatattgtcaatcagaagctcccttcgcattactgat |
54429788 |
T |
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