View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_177 (Length: 204)
Name: NF17763_low_177
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_177 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 10396579 - 10396707
Alignment:
| Q |
17 |
cacttcctgcaatggtaattccaccctctcacctttgttgtgcttcat-gctctgatctttctcttgcttagatgaaacaatttcattct------ttat |
109 |
Q |
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| T |
10396579 |
cacttcctgcgatggtacttccaccctctcacctttgttgtgcttcatcgctcttatctttctcttgcttagatgaaacaatttcattctttataattat |
10396678 |
T |
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| Q |
110 |
atgaccataaatgacagcaacaacagtgg |
138 |
Q |
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| T |
10396679 |
atcaccataaatgacagcaacaacagtgg |
10396707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 10396729 - 10396781
Alignment:
| Q |
137 |
ggatgcaaagacaattgctatgacaaagatgacagcaaaagttgagatgatgt |
189 |
Q |
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| T |
10396729 |
ggatgcaaagacaattgctatgacaaagatgacagcaaaagttgaggtgatgt |
10396781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 8913694 - 8913821
Alignment:
| Q |
17 |
cacttcctgcaatggtaattc---caccctctcacctttgttgtgcttcatg-ctctgatctttctc----ttgcttagatgaaacaatttcattcttta |
108 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||| |
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| T |
8913694 |
cacttcctgcaatggtacatctttcaccctctcacctttgttgtgcttcatcactctaatctctctctctcttgcttagatgaaacaatttcattcttta |
8913793 |
T |
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| Q |
109 |
tatgaccataaatgacagcaacaacagt |
136 |
Q |
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| T |
8913794 |
tatgaccgtaaaggacagcaacaacagt |
8913821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 38282780 - 38282879
Alignment:
| Q |
38 |
caccctctcacctttgttgtgcttcat-gctctgatctttctcttgcttagatgaaacaatttcattctttatatgaccataaatgacagcaacaacagt |
136 |
Q |
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||||||||||||| | ||||||||||| ||||| |||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |
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| T |
38282780 |
caccctctcacctgttttgtgcttcattgctctaatct--ctcttgcttagatgaaacgatttctttttttatatgaccataaatgacagcaacaacagt |
38282877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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