View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_18 (Length: 563)
Name: NF17763_low_18
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Complemental strand, 3133796 - 3133274
Alignment:
| Q |
19 |
caaacattgaagcttcttatctagaaatctcattatgaagttagggtcccttatttaatataagaaagttgaatgcaaaattttaggttgaaactcttca |
118 |
Q |
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| T |
3133796 |
caaacattgaagcttcttatctagaaatctcattatgaagtt-----cccttatttaatataagaaagttgaatgcaaaattttaggttgaaactcttca |
3133702 |
T |
|
| Q |
119 |
ggattatgatgtctgcaacagcccttaagtctaaaatgagttatactggtccaattttggtatcttttgggaacctaaatctttatgtgaaggttctgta |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133701 |
ggattatgatgtctgcaacaacccttaagtctaaaatgagttatactggtccaattttggtatcttttgggaacctaaatctttatgtgaaggttctgta |
3133602 |
T |
|
| Q |
219 |
agttttgtccatcgcagatcgcgaaaagccactgtttgttcaaattctaccatgctacagtgctatagtcccgctgtttcacaccattttgtacgaaata |
318 |
Q |
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| T |
3133601 |
aattttgtccatcgcagatcgcgaaaagccactgtt----caaattctaccatgctacagtgctatagtcccgctgtttcacatcattttgtactaaata |
3133506 |
T |
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| Q |
319 |
gtgtatcacgtaacaatagctatttgttcaaatcccataggccacaacgctatagcaccactatttgtaccctagcccgttgttaagcattaaatctcac |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3133505 |
gtgtatcacgtaacaatagctatttgttcaaatcccacaggccacaacgctatagcaccactatttgtaccctagcccgctgttaagcattaaatctcac |
3133406 |
T |
|
| Q |
419 |
aatttagaactacgatgtcaagctggagttatacttcttcgattgatctcattttacagcctagtaacttttgatagcttaaaactataggagaaagttt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3133405 |
aatttagaactacgatgtcaagctggagttatacttcttcgattgatctcattttacagcctagtaacttttgatagcttaaaactttaggagaaagttt |
3133306 |
T |
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| Q |
519 |
atggattccaaaccttctttattacctatgct |
550 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3133305 |
atggattccaaaccttctttattacctatgct |
3133274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 457
Target Start/End: Original strand, 3122276 - 3122351
Alignment:
| Q |
382 |
tttgtaccctagcccgttgttaagcattaaatctcacaatttagaactacgatgtcaagctggagttatacttctt |
457 |
Q |
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||||||| |||||| ||||||||||||||| |||||| || | |||| |||||| |||||||||||| |||||| |
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| T |
3122276 |
tttgtacattagccccttgttaagcattaaaactcacacttatgcactatgatgtccagctggagttatgcttctt |
3122351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 21754313 - 21754245
Alignment:
| Q |
277 |
agtgctatagtcccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgt |
345 |
Q |
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| T |
21754313 |
agtgctatagcgccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagcgatttgt |
21754245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 25252089 - 25252041
Alignment:
| Q |
303 |
cattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaat |
351 |
Q |
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| T |
25252089 |
cattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaat |
25252041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 12138270 - 12138169
Alignment:
| Q |
253 |
tttgttcaaattctaccatgctacagtgctatagtcccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaatc |
352 |
Q |
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||||||||||||| || |||| || |||||||||| ||||| ||| |||||||||||||| ||||| ||||| | | |||||||| ||||||||| ||| |
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| T |
12138270 |
tttgttcaaattccacaatgcaactgtgctatagtgccgcttttttacaccattttgtactaaatattgtattatgggacaatagcaatttgttcagatc |
12138171 |
T |
|
| Q |
353 |
cc |
354 |
Q |
| |
|
|| |
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|
| T |
12138170 |
cc |
12138169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 1310193 - 1310131
Alignment:
| Q |
289 |
ccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaat |
351 |
Q |
| |
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||||| ||||||| || |||||| ||||||||||||| | ||||||||| |||||||||||| |
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| T |
1310193 |
ccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaat |
1310131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 351
Target Start/End: Complemental strand, 5336604 - 5336505
Alignment:
| Q |
252 |
gtttgttcaaattctaccatgctacagtgctatagtcccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaat |
351 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||| |||| ||| ||| || ||||| | ||| ||||||||| | |||||||| |||||||||||| |
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| T |
5336604 |
gtttgttcaaattctactatactatagtgctatagcaacgctatttaacaacactttgtgctaaacagtgtatcatggaacaataggaatttgttcaaat |
5336505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 40919336 - 40919293
Alignment:
| Q |
307 |
ttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaa |
350 |
Q |
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| T |
40919336 |
ttgtacgaaatagtgtatcacggaacaatagtgatttgttcaaa |
40919293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 18839169 - 18839206
Alignment:
| Q |
314 |
aaatagtgtatcacgtaacaatagctatttgttcaaat |
351 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||| |
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| T |
18839169 |
aaatactgtatcacggaacaatagctatttgttcaaat |
18839206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 770388 - 770340
Alignment:
| Q |
306 |
tttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaatccc |
354 |
Q |
| |
|
||||||| |||||| |||||||| ||||||| | ||||||||||||||| |
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| T |
770388 |
tttgtactaaatagcgtatcacggaacaataccgatttgttcaaatccc |
770340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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