View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_2 (Length: 825)

Name: NF17763_low_2
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_2
NF17763_low_2
[»] chr4 (5 HSPs)
chr4 (19-222)||(37770639-37770842)
chr4 (624-807)||(37771294-37771495)
chr4 (415-559)||(37771085-37771229)
chr4 (297-387)||(37770917-37771007)
chr4 (487-552)||(55465513-55465578)
[»] chr8 (2 HSPs)
chr8 (456-552)||(31596441-31596537)
chr8 (485-536)||(8210158-8210210)
[»] chr7 (1 HSPs)
chr7 (456-557)||(40334976-40335077)
[»] chr6 (1 HSPs)
chr6 (456-515)||(27127527-27127586)
[»] chr1 (1 HSPs)
chr1 (487-552)||(17402940-17403006)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 4e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 37770639 - 37770842
Alignment:
Q  19 actttggaggtttatcggaggagattcatgtcgaaggaactctacatcagaagaggcatcaaacttggcaatataaattgttattgaaaacaacaacttt 118  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  37770639 actttggaggtttatcgggggagactcatgtcgaaggaactctacatcagaagaggcaccaagcttggcaatagaaattgttattgaaaacaacaacttt 37770738  T
Q  119 tacttttaaatagttaaatataccacttttcacaattttgtattaatttccttaattaataccacatggacactctttagcatttacttaaaaatatttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37770739 tacttttaaatagttaaatataccacttttcacaattttgtattaatttccttaattaataccacatggacactctttagcatttacttaaaaatatttg 37770838  T
Q  219 acac 222  Q
    ||||    
T  37770839 acac 37770842  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 624 - 807
Target Start/End: Original strand, 37771294 - 37771495
Alignment:
Q  624 caagacatttaatgattcaatgtcaggtaccagtaattggattgggtccggctcttcgaggagttgttatctttttctttgacttgttccttggctgt-- 721  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  37771294 caagatatttaatgattcaatgtcaggtaccagtaattggattgggtccggctcttcgaggagttgttatctttttctttgacttgttccttggctgtgt 37771393  T
Q  722 -----------------gttttgttgtattttatcttctctattttcttggagtaccttcgatacactgagcctggcggcgtgtgtttgccctcaatacc 804  Q
                     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37771394 ttttagttgatgctgtagttttgttgta-tttatcttctctattttcttggagtaccttcgatacactgagcctggcggcgtgtgtttgccctcaatatc 37771492  T
Q  805 tct 807  Q
    |||    
T  37771493 tct 37771495  T

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Target: chr4; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 415 - 559
Target Start/End: Original strand, 37771085 - 37771229
Alignment:
Q  415 ttatagaaaatgttacagagtgctcttaaaacattgtttgaaaaaatagaaatattgtgtcgaggaataatgaaaaatgatgaattctactttttaaaag 514  Q
    |||||| |||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37771085 ttataggaaatattacagagtgttcttaagacattgtttaaaaaaatagaaatattgtgtcgaggaatagtgaaaaatgatgaattctactttttaaaag 37771184  T
Q  515 taaaaaattgtttattctaatataaaactactacttttaatttcc 559  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  37771185 taaaaaattgtttattctaatataaaactactacatttaatttcc 37771229  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 37770917 - 37771007
Alignment:
Q  297 gtcatcataagttaaactcacttggtaggaacatttgtataatatatggaagggtttgggttcaaacacctcacgtattcgtcgtataaag 387  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||| |||| |||||||||||    
T  37770917 gtcatcataagttaaactcacttggcaggaacatttgtataatatattgaaggatctgggttcaaacacctcacatatttgtcgtataaag 37771007  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 552
Target Start/End: Original strand, 55465513 - 55465578
Alignment:
Q  487 aaaaatgatgaattctactttttaaaagtaaaaaattgtttattctaatataaaactactactttt 552  Q
    ||||||||||||||| || ||||||||||  ||||||||   ||||||||||||||||||| ||||    
T  55465513 aaaaatgatgaattcaacattttaaaagtttaaaattgtagtttctaatataaaactactattttt 55465578  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 552
Target Start/End: Original strand, 31596441 - 31596537
Alignment:
Q  456 aaaaatagaaatattgtgtcgaggaataatgaaaaatgatgaattctactttttaaaagt-aaaaaattgtttattctaatataaaactactactttt 552  Q
    |||||||||||||||||||  |  |||  |||||||||||||||| |||||||||||||| |||| |||||| | |||| |||| || ||||||||||    
T  31596441 aaaaatagaaatattgtgttaaaaaatggtgaaaaatgatgaattttactttttaaaagtcaaaatattgttaaatctattatataa-tactactttt 31596537  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 8210210 - 8210158
Alignment:
Q  485 tgaaaaatgatgaattctactttttaaaag-taaaaaattgtttattctaata 536  Q
    ||||||||||||||||| |||||||||||| ||||||||||||  ||||||||    
T  8210210 tgaaaaatgatgaattcaactttttaaaagttaaaaaattgttgtttctaata 8210158  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 557
Target Start/End: Complemental strand, 40335077 - 40334976
Alignment:
Q  456 aaaaatagaaatattgtgtcgaggaataatgaaaaatgatgaattctactttttaaaagtaaaaaattgtttattctaatataaaactactacttttaat 555  Q
    |||||||||||| | ||||  | |||| || |||| |||||||||  |||||||||||| |||||||| || |||| ||| ||||| ||||| |||||||    
T  40335077 aaaaatagaaatttcgtgttaaagaatgataaaaagtgatgaatttaactttttaaaagaaaaaaattattgattcaaatgtaaaattactatttttaat 40334978  T
Q  556 tt 557  Q
    ||    
T  40334977 tt 40334976  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 27127527 - 27127586
Alignment:
Q  456 aaaaatagaaatattgtgtcgaggaataatgaaaaatgatgaattctactttttaaaagt 515  Q
    ||||||||||||||||| | ||| |||  ||||||||||||||||  |||||||||||||    
T  27127527 aaaaatagaaatattgtattgagaaatggtgaaaaatgatgaatttaactttttaaaagt 27127586  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 552
Target Start/End: Complemental strand, 17403006 - 17402940
Alignment:
Q  487 aaaaatgatgaattctactttttaaaagtaaaaa-attgtttattctaatataaaactactactttt 552  Q
    |||| |||||||||  ||||||||||||| |||| |||||| | |||||| ||||||||||||||||    
T  17403006 aaaagtgatgaatttaactttttaaaagtcaaaatattgttgaatctaatgtaaaactactactttt 17402940  T

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