View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_22 (Length: 551)
Name: NF17763_low_22
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 23988762 - 23988212
Alignment:
| Q |
1 |
caattcccttccacatagtcaggagagtcatgttgagttccttgtgccttgaagacaaagtcgctaggtttgtgctcaaaagagtctgtggtatccccca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23988762 |
caattcccttccacatagtcaggagagtcatgttgagttccttgtgccttgaagacaaagtcgctaggtttgttctcaaaagagtctgtggtatccccca |
23988663 |
T |
|
| Q |
101 |
attcttggcaacttttaatggga---------caactggctggacatccagctgaagtttctcaacagatgtattgggaagctaggaatgaaaccttaaa |
191 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23988662 |
attcttggcaacttttaatgggagttgtgggtcaactggctggacatccagctgaagtttctcaacagatgtattgggaagctaggaatgaaaccttaaa |
23988563 |
T |
|
| Q |
192 |
gggtcataatcactatcgcaaacaggtgagacttttagtttcgccgatgttttgcatattttagcaggtgttcctgttatttcagtcggttcatcattcc |
291 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23988562 |
gggtcataatcactatcgcaaagaggtgacacttttagtttcgccgatgttttgcatattttagcaggtgttcctgttatttcagtcggttcatcattcc |
23988463 |
T |
|
| Q |
292 |
actcaagggcatcagtaatagcttcttttgattcctccgcagcttgttcgcccaaaagtggatttccaccggtacctaatccaccagtcataagctctcc |
391 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23988462 |
actcaagggcatcagtaatagcttcttttgattcctccgcagcttgttcgcccaaaagtggatttccaccggtacctaatccaccagtcataagctctcc |
23988363 |
T |
|
| Q |
392 |
aattttaatagggtttttagcagccaaatgcaacaacgctgtatttattgcatagaagtcctccacctctgaaaaacacgaattctcaataatttgattg |
491 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |
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| T |
23988362 |
aattttaatagggtttttagcagccaaatgcaacaacgctgtatttattgcatagaagtcctccacctccgaaaaactcgaattctcaataattttgttg |
23988263 |
T |
|
| Q |
492 |
ttttcaactatagattcatcgtttatttcagttgtgtcattattgatgatg |
542 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||||||||| |
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|
| T |
23988262 |
ttttcaactacagatggattgtttatttcagttgtgtcattattgatgatg |
23988212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 39596055 - 39595836
Alignment:
| Q |
63 |
gctaggtttgtgctcaaaagagtctgtggtatcccccaattcttggcaacttttaatggga----------caactggctggacatccagctgaagtttc |
152 |
Q |
| |
|
||||||| ||||||||||||| || ||| |||| ||||||||||||||| ||||||||||| ||||| || |||||| ||||||||||||| |
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| T |
39596055 |
gctaggtgtgtgctcaaaagaatccgtgctatctcccaattcttggcaaattttaatgggagttggtgggtcaactagcgggacattcagctgaagtttc |
39595956 |
T |
|
| Q |
153 |
tcaacagatgtattgggaagctaggaatgaaaccttaaagggtcataatcactatcgcaaacaggtgagacttttagtttcgccgatgttttgcatattt |
252 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
39595955 |
tcaacagatgtattgggaagccaggaatgaaaccttaaagggtcagaatcactatcgcaaacaggtgacactttcagtttcgccgatgttttgcgtattt |
39595856 |
T |
|
| Q |
253 |
tagcaggtgttcctgttatt |
272 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
39595855 |
cagcaggtgttcctgctatt |
39595836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 41108208 - 41108280
Alignment:
| Q |
296 |
aagggcatcagtaatagcttcttttgattcctccgcagcttgttcgcccaaaagtggatttccaccggtacct |
368 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
41108208 |
aagggcatcagcaatagcttcttttgattcctcggcagcttgttcgcccaaaagtggattcccaccggtacct |
41108280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 39596317 - 39596262
Alignment:
| Q |
5 |
tcccttccacatagtcaggagagtcatgttgagttccttgtgccttgaagacaaag |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39596317 |
tcccttccacatagtcaggagagtcatgttgagttccttgtgccttgaagacaaag |
39596262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 21867059 - 21867119
Alignment:
| Q |
308 |
aatagcttcttttgattcctccgcagcttgttcgcccaaaagtggatttccaccggtacct |
368 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
21867059 |
aatagtttcttttgattcctcagcagcttgttcccccaaaagtggattaccaccagtacct |
21867119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 33053888 - 33053932
Alignment:
| Q |
498 |
actatagattcatcgtttatttcagttgtgtcattattgatgatg |
542 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33053888 |
actacagattcatcgtttatttcagttatgtcattattgatgatg |
33053932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 34988627 - 34988673
Alignment:
| Q |
496 |
caactatagattcatcgtttatttcagttgtgtcattattgatgatg |
542 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
34988627 |
caactacagatgcatcgtttatttcagttgtgtcattactgatgatg |
34988673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 490
Target Start/End: Original strand, 13991095 - 13991133
Alignment:
| Q |
452 |
ctccacctctgaaaaacacgaattctcaataatttgatt |
490 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||| |
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| T |
13991095 |
ctccacctttgaaaaactcgaattctcaataatttgatt |
13991133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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