View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_24 (Length: 548)
Name: NF17763_low_24
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Complemental strand, 23923052 - 23922535
Alignment:
| Q |
12 |
gaagaatatagtagtggtggtagaagatgtagatgcagcaagaacagccctaaaatgggctctaataaacatcattagatatggtgatataatcacactt |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23923052 |
gaagaaaatagtagtggtggtagaagatgtagatgcagcaagaacagccctaaaatgggctctaataaacatcattagatatggtgatataatcacactt |
23922953 |
T |
|
| Q |
112 |
cttcatgtttacaattcttctaacacaagatcaagaagtagaagtagaagcagaagcaaagctcgtcttcttcgcctcgacggttttcgattagcactat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23922952 |
cttcatgtttacaattcttctaacacaagatcaagaagaagaagtagaagtagaagcaaagctcgtcttcttcgcctcgacggttttcgattagcacttt |
23922853 |
T |
|
| Q |
212 |
catttcaagacatttgcaacgattatcccaatgtatgtataatatgtttgattgttagttcatannnnnnnnnnnnnnnnnnnnnnnnatgttcaaatta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
23922852 |
catttcaagacatttgcaacgattatcccaatgtatgtatactatgtttgattcttagttcataagtttttgtttttgtttttgttttatgttcaaatta |
23922753 |
T |
|
| Q |
312 |
attgatatgtgtcatatnnnnnnncttaggattgtgttgcagacaaaggttgagattattgtgacagaaggggagaatgaaggaacaaagattgcagcta |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23922752 |
attgatatgtgtcatataaaaaaacttaggattgtgttgcagacaaaggttgagattattgtgacagaaggggagaatgaaggaacaaagattgcagcta |
23922653 |
T |
|
| Q |
412 |
ctgtgagagaaattggtgcttctatgcttgttgttggactccatgatcatagttttctttacaagtaagtgataatatgaaaataattcattttaatttt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23922652 |
ctgtgagagaaattggtgcttctatgcttgttgttggactccatgatcatagttttctttacaagtaagtgctaatatgaaaataattcattttaatttt |
23922553 |
T |
|
| Q |
512 |
taggtcaattaatgaaag |
529 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23922552 |
caggtcaattaatgaaag |
23922535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University