View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_26 (Length: 532)

Name: NF17763_low_26
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_26
NF17763_low_26
[»] chr7 (7 HSPs)
chr7 (193-429)||(48636021-48636251)
chr7 (19-195)||(48637364-48637541)
chr7 (441-488)||(9805434-9805481)
chr7 (441-496)||(35080286-35080341)
chr7 (441-496)||(35081601-35081656)
chr7 (441-487)||(23621990-23622036)
chr7 (446-488)||(36868771-36868813)
[»] chr4 (5 HSPs)
chr4 (441-496)||(8749046-8749101)
chr4 (441-496)||(8747694-8747749)
chr4 (441-496)||(33997896-33997951)
chr4 (441-496)||(8896953-8897008)
chr4 (19-112)||(35293053-35293144)
[»] chr5 (3 HSPs)
chr5 (441-518)||(124507-124584)
chr5 (441-496)||(5504136-5504191)
chr5 (441-496)||(5502921-5502975)
[»] chr2 (5 HSPs)
chr2 (441-496)||(27552455-27552510)
chr2 (445-496)||(12812843-12812894)
chr2 (441-488)||(27553815-27553862)
chr2 (32-116)||(7816916-7817001)
chr2 (441-486)||(10853155-10853200)
[»] chr3 (9 HSPs)
chr3 (20-160)||(33282858-33282997)
chr3 (441-518)||(51220580-51220657)
chr3 (441-496)||(10584082-10584137)
chr3 (441-496)||(32829743-32829798)
chr3 (441-487)||(21326323-21326369)
chr3 (441-494)||(26722536-26722589)
chr3 (24-84)||(47731158-47731218)
chr3 (441-488)||(53157184-53157230)
chr3 (441-486)||(32831100-32831145)
[»] chr6 (1 HSPs)
chr6 (438-496)||(22417658-22417716)
[»] chr8 (2 HSPs)
chr8 (441-486)||(13883878-13883923)
chr8 (43-116)||(10839987-10840060)
[»] chr1 (3 HSPs)
chr1 (441-496)||(46312068-46312123)
chr1 (445-488)||(46525850-46525893)
chr1 (441-486)||(3000223-3000268)
[»] scaffold1875 (1 HSPs)
scaffold1875 (441-494)||(759-812)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 193 - 429
Target Start/End: Complemental strand, 48636251 - 48636021
Alignment:
Q  193 atccacaccttgtacttcaaggtccttccccattagctaaatatgttttttcatatcataattcaaaaatatatagatagaagagattccacctctttac 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  48636251 atccacaccttgtacttcaaggtccttccccattagctaaatatgttttttcata-----attcaaaaatatatagatagaagagattccacctctttac 48636157  T
Q  293 atttaatttattgtcatatttttgttgataaaattatttttaacgttgaagtnnnnnnnnnnnnncatgtaaccaaagatgattacgaaccatgaagctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||    
T  48636156 atttaacttattgtcatatttttgttgataaaattatttttaacgttgaagt-aaaaaaaaaaaacatgtaaccaaagatgattacgaaccatgaagctt 48636058  T
Q  393 tttaggtgaatctaaattttcatgtatacgtgataat 429  Q
    |||||||||||||||||||||||||||||||||||||    
T  48636057 tttaggtgaatctaaattttcatgtatacgtgataat 48636021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 48637541 - 48637364
Alignment:
Q  19 ttatgaaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagcatttttacctgagtttgatgaaaataagatta 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48637541 ttatgaaccttacttttaacaacggtgaatttggacataccaacttaacattaagcgtccgcataagcatttttacctgagtttgatgaaaataagatta 48637442  T
Q  119 cgtagtgcaaatgtttcctgacttaaaggaccaatttgtaa-cnnnnnnntctaaatgaatgatttgttataaatatc 195  Q
    ||||||||||||||||||| ||||||||||||||||||||| |       ||||||||||||||||||||||||||||    
T  48637441 cgtagtgcaaatgtttcctaacttaaaggaccaatttgtaaccaaaaaaatctaaatgaatgatttgttataaatatc 48637364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 9805481 - 9805434
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggc 488  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  9805481 taaactacagttttgaccccctaagtttgccaatgttgcgattttggc 9805434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 35080286 - 35080341
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  35080286 taaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 35080341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 35081656 - 35081601
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||    
T  35081656 taaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaat 35081601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 23622036 - 23621990
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttgg 487  Q
    ||||||||| ||||| || | ||||||||||||||||||||||||||    
T  23622036 taaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 36868771 - 36868813
Alignment:
Q  446 tacacttttgaccccttaagtttgccaatgttgcgattttggc 488  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  36868771 tacacttttgaccccttaagttttccaaagttgtgattttggc 36868813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 8749101 - 8749046
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8749101 taaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 8747694 - 8747749
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  8747694 taaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8747749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 33997951 - 33997896
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||| | |||||||    
T  33997951 taaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaat 33997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 8897008 - 8896953
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| ||||||| || |||||||||||||||| |||||||||  |||||||    
T  8897008 taaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 35293053 - 35293144
Alignment:
Q  19 ttatgaaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagcatttttacctgagtttgatgaaaata 112  Q
    ||||||||| || |||| | | || ||||||| || |||||||||||||||||| ||| | ||||  |||||||| |||||||| |||||||||    
T  35293053 ttatgaaccctaattttgagagcgatgaatttagacataccaacttaacattaaacgttcatata--catttttaactgagtttaatgaaaata 35293144  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 124584 - 124507
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaatnnnnnnntgaatattttgcccc 518  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||       |||||||||||||||    
T  124584 taaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaataaaaaaatgaatattttgcccc 124507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 5504191 - 5504136
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||    
T  5504191 taaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaat 5504136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 5502921 - 5502975
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  5502921 taaactacagttttgaccc-ttaagtttgccaatgttgcaattttggccccctaat 5502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 27552455 - 27552510
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  27552455 taaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 12812843 - 12812894
Alignment:
Q  445 ctacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||| |||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  12812843 ctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 27553862 - 27553815
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggc 488  Q
    ||||||||| |||| ||||| ||||||||| |||||||||||||||||    
T  27553862 taaactacagttttaaccccctaagtttgctaatgttgcgattttggc 27553815  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 7817001 - 7816916
Alignment:
Q  32 ttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagcattttt-acctgagtttgatgaaaataagat 116  Q
    ||||||||||  ||||||| || |||| |||||||||||||| |  |  |||| ||||||| | ||||||||||||||||||||||    
T  7817001 ttttaacaacaatgaatttagacatactaacttaacattaagtgctcacataaacatttttcaactgagtttgatgaaaataagat 7816916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 10853200 - 10853155
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 486  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttg 10853155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 33282858 - 33282997
Alignment:
Q  20 tatgaaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagca-tttttacctgagtttgatgaaaataagatta 118  Q
    |||||||| || |||||| || ||||||||| ||  ||||||||||||||||| |||||  |||| || |||||| ||||||||||| |||||| ||| |    
T  33282858 tatgaaccctaattttaagaatggtgaatttagacctaccaacttaacattaaacgtccacataaacactttttaactgagtttgattaaaatatgataa 33282957  T
Q  119 cgtagtgcaaatgtttcctgacttaaaggaccaatttgtaac 160  Q
     |  |||  |||||||  ||||||||||||||||||||||||    
T  33282958 tgatgtg--aatgttttatgacttaaaggaccaatttgtaac 33282997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 51220657 - 51220580
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaatnnnnnnntgaatattttgcccc 518  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| || |||||||       |||||||||||||||    
T  51220657 taaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaataaaaaaatgaatattttgcccc 51220580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 10584137 - 10584082
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||    
T  10584137 taaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 32829743 - 32829798
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||    
T  32829743 taaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaat 32829798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 21326323 - 21326369
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttgg 487  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||||    
T  21326323 taaactacacttttgaccccttaagtttaccaatattgcaattttgg 21326369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 26722536 - 26722589
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctcccta 494  Q
    ||||||||| ||||| |||| ||||||| ||||||||||||||||||| |||||    
T  26722536 taaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 47731158 - 47731218
Alignment:
Q  24 aaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataa 84  Q
    ||||||| |||||||| ||||||||||| | ||||| |||||||||||| ||||| |||||    
T  47731158 aaccttagttttaacagcggtgaatttgaaaataccgacttaacattaaacgtccatataa 47731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 53157230 - 53157184
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggc 488  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  53157230 taaactacagttttgacccct-aagtttgccaatgttgcgattctggc 53157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 32831145 - 32831100
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 486  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||    
T  32831145 taaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 22417658 - 22417716
Alignment:
Q  438 ggttaaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    |||||||||||| |||||||||| ||||||||| |||||| |||||||||| |||||||    
T  22417658 ggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 13883923 - 13883878
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 486  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  13883923 taaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 10839987 - 10840060
Alignment:
Q  43 gtgaatttggatataccaacttaacattaagcgtccgtataagcatttttacctgagtttgatgaaaataagat 116  Q
    ||||||||||| ||| ||||||||||| || |||||  |||| || ||||| | ||||||||||||||||||||    
T  10839987 gtgaatttggacatatcaacttaacataaaacgtccacataaacacttttaaccgagtttgatgaaaataagat 10840060  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 46312068 - 46312123
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 496  Q
    ||||||||| |||||||||| ||| ||| ||||||||||||||||||| |||||||    
T  46312068 taaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 488
Target Start/End: Complemental strand, 46525893 - 46525850
Alignment:
Q  445 ctacacttttgaccccttaagtttgccaatgttgcgattttggc 488  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||    
T  46525893 ctacagttttggccccctaagtttgccaatgttgcgattttggc 46525850  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 3000268 - 3000223
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 486  Q
    ||||||||| |||||||||||||| ||||  |||||||||||||||    
T  3000268 taaactacagttttgaccccttaattttgttaatgttgcgattttg 3000223  T

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Target: scaffold1875 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 759 - 812
Alignment:
Q  441 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctcccta 494  Q
    |||||| ||||||| |||||||||||||   ||||||||||||||||| |||||    
T  759 taaactgcacttttcaccccttaagtttcgaaatgttgcgattttggcccccta 812  T

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