View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_28 (Length: 515)
Name: NF17763_low_28
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 31456101 - 31456608
Alignment:
| Q |
1 |
acatgaaaatcaataac-actcacaaatggattcaaagatgattgcaactaacatgagcctaacaccaactttagctcagtggaaaaagctaagacttaa |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31456101 |
acatgaaaatcaataactactcacaaatggattcaaagatgattgcacataacatgagcctaacaccaactttagctcagtggaagaagctaagacttaa |
31456200 |
T |
|
| Q |
100 |
accaaaacacacttttgtagttggagttcttgcaaggcctacagatgatatttcagaagaaacattaagaaaaactaatgtatacaaagataattggttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456201 |
accaaaacacacttttgtagttggagttcttgcaaggcctacagatgatatttcagaagaaacattaagaaaaactaatgtatacaaagataattggttt |
31456300 |
T |
|
| Q |
200 |
gataaattagctataaaccatttatcaaaaagtgttcaagcagcaacaggtaattcatcccttttccgattagtataattcatttctaaaaccagtaatt |
299 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
31456301 |
gacaaattagctataaaccatttatcaaaaagtgttcaagcagcaacaggtaattcatcccttttccgattagtataattcatttttaaaaccagtcatt |
31456400 |
T |
|
| Q |
300 |
ctcgttgtttacggtcatttctgaatcttctgcaggaatcagtaacaataagagtggttttgatagccttgttgaggcagctaccgtggcttcacagaaa |
399 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456401 |
ttcgttgtttacgatcatttctgaatcctctgtaggaatcagtaacaataagagtggttttgatagccttgttgaggcagctaccgtggcttcacagaaa |
31456500 |
T |
|
| Q |
400 |
tttaatactactcaacagcaaggaattattctagatgcacttgatagagcttttccaaaaccaatactttcagtggtgagttcattacaattttgtgtca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456501 |
tttaatactactcaacagcaaggaattattctagatgcacttgatagagcttttccaaagccaatactttcagtggtgagttcattacaattttgtgtca |
31456600 |
T |
|
| Q |
500 |
tattcttc |
507 |
Q |
| |
|
|||||||| |
|
|
| T |
31456601 |
tattcttc |
31456608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 38465326 - 38465235
Alignment:
| Q |
330 |
tgcaggaatcagtaacaataagagtggttttgatagccttgttgaggcagctaccgtggcttcacagaaatttaatactactcaacagcaag |
421 |
Q |
| |
|
||||||| |||| |||||||||||||| | ||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| |||| |
|
|
| T |
38465326 |
tgcaggactcagaaacaataagagtggctatgagagccttgttgaggcagctactatggcaaaacagaaatttaatgctattcaacaacaag |
38465235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 38465455 - 38465387
Alignment:
| Q |
182 |
tacaaagataattggtttgataaattagctataaaccatttatcaaaaagtgttcaagcagcaacaggt |
250 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
38465455 |
tacaaagataactggtttgatctgatagcaataaaccatttatcaaaaacagttcaagctgccacaggt |
38465387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University