View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_29 (Length: 515)
Name: NF17763_low_29
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_29 |
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| [»] scaffold2079 (2 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 54 - 265
Target Start/End: Original strand, 6242177 - 6242388
Alignment:
| Q |
54 |
aattgtgtgactttgctcaaatgcacaagttggaaaaatgtcaaacatttacaagattaaagacaaaaacta--aatataaaaatgaaggaataaatgga |
151 |
Q |
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| T |
6242177 |
aattatgtgactatgctcaaatgaacaagttgaaaaaatgtcaaacatttaaaagattaaagacaaaaactaacaatataaaaatgaaggaataaatgg- |
6242275 |
T |
|
| Q |
152 |
aatctatttggtgggaccggttcaatcttgtttactctttggtcgtgaagtttctcaatcgagaactatagtataaaacgaattcgtattaaacgttttt |
251 |
Q |
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||||||||||||||||| |||||||| || ||| ||| |||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242276 |
aatctatttggtgggacaggttcaattttctttgctcgttggacaagaaatt--tcaatcgagaactatagtataaaacgaattcgtattaaacgttttt |
6242373 |
T |
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| Q |
252 |
-atgggtcactgtct |
265 |
Q |
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|||||||||||||| |
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| T |
6242374 |
aatgggtcactgtct |
6242388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 216 - 480
Target Start/End: Complemental strand, 6333977 - 6333713
Alignment:
| Q |
216 |
actatagtataaaacgaattcgtattaaacgtttttatgggtcactgtctt-tccaaattgtgtcaaacctctttttccatgttttttctttcaaggaga |
314 |
Q |
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| T |
6333977 |
actatcgtataaaacga-ttcgtattaaacgtttaaatgggtcactttctcatccaaattgtgtcatacctctttttccctgttttttcttc-------a |
6333886 |
T |
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| Q |
315 |
aaagtctattccaaacac-caactattatataagaaaagaaatattgaagaacgtgatgtactcaacaaaagtttagtttgaagaacaatggaagtatta |
413 |
Q |
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| T |
6333885 |
tatctctttttccaaaactcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagtttagtttgaagaacaatggctgaatta |
6333786 |
T |
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| Q |
414 |
ggagctac------aattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattttca |
480 |
Q |
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| T |
6333785 |
ggagctacaattacaattccaaatgcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttca |
6333713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 348 - 496
Target Start/End: Original strand, 6242427 - 6242581
Alignment:
| Q |
348 |
aaaagaaatattgaagaacgtgatgtactcaacaaaagtttagtttgaagaacaatggaagtattaggagctacaattccaaatgc------aacttcaa |
441 |
Q |
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| T |
6242427 |
aaaagcaatattgaagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaa |
6242526 |
T |
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| Q |
442 |
cttcatcagattcaacaaggtaaataacttcaattttcaatcactactcaaacat |
496 |
Q |
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| T |
6242527 |
cttcatcggattcaataaggtaaataacttcaattttcaatcactactcaaacat |
6242581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 206 - 496
Target Start/End: Complemental strand, 6326500 - 6326217
Alignment:
| Q |
206 |
tcaatcgagaactatagtataaaacgaattcgtattaaacgtttttatgggtcactgtc------tttccaaattgtgtcaaacctctttttccatgttt |
299 |
Q |
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|||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| || |||||||| |||||||| ||||||||||||||| | |
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| T |
6326500 |
tcaatcgaatactatcgtataaaacga-ttcgtattaaacgttta-atgggtcactttcactatctttccaaagtgtgtcaagcctctttttccatgtct |
6326403 |
T |
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| Q |
300 |
tttctttcaaggagaaaagtctattccaaacaccaactattatataagaaaagaaatattgaagaacgtgatgtactcaacaaaagtttagtttgaagaa |
399 |
Q |
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| T |
6326402 |
tttctt--------------ctattccaaaactcaactcttctataagaaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaa |
6326320 |
T |
|
| Q |
400 |
caatggaagtattaggagctacaattccaaatgcaacttcaacttca------tcagattcaacaaggtaaataacttcaattttcaatcactactcaaa |
493 |
Q |
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| T |
6326319 |
caatggctgaattagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttcaatcactactcaaa |
6326220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 6220902 - 6220986
Alignment:
| Q |
321 |
tattccaaacaccaactattatataagaaaagaaatattgaagaacgtgatgtactcaacaaaagtttagtttgaagaacaatgg |
405 |
Q |
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| T |
6220902 |
tattccaaacatcaactattatataagtaaaccaatattgaagcatgtgttgtactcatcaaaagttgagtttgaagaacaatgg |
6220986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 6330679 - 6330641
Alignment:
| Q |
222 |
gtataaaacgaattcgtattaaacgtttttatgggtcact |
261 |
Q |
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| T |
6330679 |
gtataaaacgaattcgtattaaacg-ttttatgggtcact |
6330641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 6347157 - 6347119
Alignment:
| Q |
222 |
gtataaaacgaattcgtattaaacgtttttatgggtcact |
261 |
Q |
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| T |
6347157 |
gtataaaacgaattcgtattaaacg-ttttatgggtcact |
6347119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 62 - 305
Target Start/End: Original strand, 372 - 612
Alignment:
| Q |
62 |
gactttgctcaaatgcacaagttggaaaaatgtcaaacatttacaagattaaagacaaaaacta--aatataaaaatgaaggaataaatggaaatctatt |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
372 |
gactatgctcaaatgcacaagttggaaaaatgtcaaacatttaaaagattaaagacaaaaactaacaatataaaaatgaaggaataaatgg-aatctatt |
470 |
T |
|
| Q |
160 |
tggtgggaccggttcaatcttgtttactctttggtcgtgaagtttctcaatcgagaactatagtataaaacgaattcgtattaaacgtttttatgggtca |
259 |
Q |
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||||||||| |||||||| | ||| ||| |||| | ||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
471 |
tggtgggacaggttcaattgtttttgctcgttggacaagaaagt--tcaatcgag---tatagtataaaacgaattcgtattaaacgtttttatgggtca |
565 |
T |
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| Q |
260 |
ctgtct-ttccaaattgtgtcaaacctctttttccatgttttttctt |
305 |
Q |
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| T |
566 |
ctgtctcatgcaaattgtttcatagctccttttccatgttttttctt |
612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 348 - 496
Target Start/End: Original strand, 643 - 794
Alignment:
| Q |
348 |
aaaagaaatattgaagaacgtgatgtactcaaca---aaagtttagtttgaagaacaatggaagtattaggagctacaattccaaatgcaacttcaactt |
444 |
Q |
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||||| |||||||||||| ||| |||||||| || |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
643 |
aaaagcaatattgaagaatgtgttgtactcatcatcaaaagttgagtttgaagaacaatggcagaattaggagctacaattccaaatgcaacttcaactt |
742 |
T |
|
| Q |
445 |
catcagattcaacaaggtaaataacttcaattttcaatcactactcaaacat |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
743 |
catcagattcaacaaggtaaataacttcaattttcaatcactactcaaacat |
794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 121 - 161
Alignment:
| Q |
220 |
tagtataaaacgaattcgtattaaacgtttttatgggtcact |
261 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
121 |
tagtataaaacgaattcgtattaaacg-ttttatgggtcact |
161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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