View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_30 (Length: 515)
Name: NF17763_low_30
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 32308188 - 32307677
Alignment:
| Q |
1 |
aaataccaactttcccttcatcagtctcaacccgaatatcatcatcactcatcacttctttcgcgccttttccatctgatgcttttgcctgttcttcgcc |
100 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
32308188 |
aaataccaactttcccttcatctgactcaacccgaataacatcatcactcatcacttctttctcgacttttccatctgatgcttttgcctgttcttcgcc |
32308089 |
T |
|
| Q |
101 |
atcaataacttctttgtctccaatttccttctctttgtctgaatcatcaatctttccagaaataccaactttccctccatccaactcaacccgagtaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32308088 |
atcaataacttctttgtctccaatttccttctctttgtctgaatcatcaatctttccagaaataccaactttccctccatccaactcaacccgagtaaca |
32307989 |
T |
|
| Q |
201 |
ttgtcacttactacttctttctccaatatttcatctaccccctcctcctccttcttctgctcatccaatgttttcaaagttgcttcatttccacccaact |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32307988 |
ttgtcacttactacttctttctccaatattccatctacctcctcctccttcttcttctgctcatccaatgttttcaaagttgcttcatttccacccaact |
32307889 |
T |
|
| Q |
301 |
caactacctcattctcactcttaccttctaatgacccaacaacttgagaatcctcaaaccctgcaattcctccaatagcaacattcacaactttaccctc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32307888 |
caactacctcattctcactcttaccttctaatgacccaacaacttgagaatcctcaaaccctacaattcctccaatagcaacattcacaactttaccctc |
32307789 |
T |
|
| Q |
401 |
ctcaactgacccatcaaaacccacatcgttattcacctcaacactaccacaaacaccatctttatgcaaacttgcttcatttccaccaaactcaacctcc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32307788 |
ctcaactgacccatcaaaacccacatcgttattcacctcaacactaccacaaacaccatctttatgcaaacttgcttcatttccaccaaactcaacctcc |
32307689 |
T |
|
| Q |
501 |
ttcttctcactc |
512 |
Q |
| |
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| |||||||||| |
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| T |
32307688 |
tccttctcactc |
32307677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 32308341 - 32308125
Alignment:
| Q |
7 |
caactttcccttcatcagtctcaacccgaatatcatcatcactcatcacttctttcgcgccttttccatctgatgcttttgcctgttcttcgccatcaat |
106 |
Q |
| |
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|||||||||||||||| | ||||||| ||||| ||||||| |||||||||| ||| | ||| |||| ||||||||||| ||||||| ||| | ||| | |
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| T |
32308341 |
caactttcccttcatctgactcaacctgaataacatcatcgctcatcactttgttcttgacttctccagctgatgcttttacctgttcatcggcgtcatt |
32308242 |
T |
|
| Q |
107 |
aacttctttgtctccaatttccttctctttgtctgaatcatcaatctttccagaaataccaactttccctccatccaactcaacccgagtaacattgtca |
206 |
Q |
| |
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|||||||| ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||| ||| |
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| T |
32308241 |
aacttcttcatctccaatttcattctcttcctgtgaatcatcaatcttctcagaaataccaactttcccttcatctgactcaacccgaataacatcatca |
32308142 |
T |
|
| Q |
207 |
cttactacttctttctc |
223 |
Q |
| |
|
|| | ||||||||||| |
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|
| T |
32308141 |
ctcatcacttctttctc |
32308125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 275 - 457
Target Start/End: Complemental strand, 32307722 - 32307540
Alignment:
| Q |
275 |
caaagttgcttcatttccacccaactcaactacctcattctcactcttaccttctaatgacccaacaacttgagaatcctcaaaccctgcaattcctcca |
374 |
Q |
| |
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|||| |||||||||||||||| |||||||| |||| ||||||||||||| ||| |||||||||||| |||||||| ||| ||||||| ||| ||||| | |
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| T |
32307722 |
caaacttgcttcatttccaccaaactcaacctcctccttctcactcttacattcaaatgacccaacagcttgagaaccctgaaacccttcaactcctcga |
32307623 |
T |
|
| Q |
375 |
atagcaacattcacaactttaccctcctcaactgacccatcaaaacccacatcgttattcacctcaacactaccacaaacacc |
457 |
Q |
| |
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|||| || | |||| ||||| |||| | |||||||||||||||||||||||| | ||||| |||| || || |||||||||| |
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| T |
32307622 |
atagtaagacccacatctttatcctcttgaactgacccatcaaaacccacatcatgattcagctcagcattagcacaaacacc |
32307540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 32308437 - 32308306
Alignment:
| Q |
67 |
cttttccatctgatgcttttgcctgttcttcgccatcaataacttctttgtctccaatttccttctctttgtctgaatcatcaatctttccagaaatacc |
166 |
Q |
| |
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|||||||||||||||||||| | ||||||||| ||||| ||| | ||| ||||||||||||||||||||||| | ||||||||| ||||||| | |
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| T |
32308437 |
cttttccatctgatgcttttacttgttcttcggcatcattaaatacttcatctccaatttccttctctttgtccaa---atcaatcttctcagaaatggc |
32308341 |
T |
|
| Q |
167 |
aactttccctccatccaactcaacccgagtaacat |
201 |
Q |
| |
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|||||||||| |||| |||||||| || |||||| |
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| T |
32308340 |
aactttcccttcatctgactcaacctgaataacat |
32308306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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