View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_32 (Length: 507)
Name: NF17763_low_32
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_32 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 43362616 - 43362115
Alignment:
| Q |
1 |
gttgaagtcatgaacaagttaaaataacagctctacaagtttaaggataactttccttaacttgtggactaagacaatgttcatgcatgaccatcaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43362616 |
gttgaagtcatgaacaagttaaaataacagctctacaagtttaaggataactttccttaacttgtggactaagacaatgttcatg----accatcaaggt |
43362521 |
T |
|
| Q |
101 |
tcacagtagaagtatatagaagtactacttaaataggtgttgaataataacttcacatgtaggagaggcccttggacataaggataattctctttctagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43362520 |
tcacagtagaagtatatagaagtactacttaaataggtgttgaataataacttcacatgtaggagaggcccttggacataaggacaattctctttctagt |
43362421 |
T |
|
| Q |
201 |
ttgagttcgtcactacaatagatttccatggttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcaccttcttgccctaaaagttc |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
43362420 |
ttgagttcgtcactgcaatagatttccatggttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcaccgtcttgccctaaaagttc |
43362321 |
T |
|
| Q |
301 |
acaagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaa------------tctactatgcaactacctttgcccatcttatcc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| |
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| T |
43362320 |
acaagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaatctttgacattttctactatccaattacctttgtccatcttatgt |
43362221 |
T |
|
| Q |
389 |
gagaatgatgagaatagatctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcacgtgcacccaattcccacccttgtt |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
43362220 |
gagaatgatgagaatagatctcaaccattaaataaaaaatgcacagttgagattaaaacatcacattaaaagtcacgtgcacccaattctcacccttatt |
43362121 |
T |
|
| Q |
489 |
catctc |
494 |
Q |
| |
|
|||||| |
|
|
| T |
43362120 |
catctc |
43362115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 49426405 - 49426545
Alignment:
| Q |
149 |
aacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gcaaaactcttgca |
247 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| |||| ||||| | | ||||||||| | || ||||| ||||| ||||||| |||||||||||||| |
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|
| T |
49426405 |
aacttcacatataggggaggcccttgggcataataataactctctatatgttttgagttctttaccacaattgattttcatggtttgcaaaactcttgca |
49426504 |
T |
|
| Q |
248 |
ttcttcacaatatatattgccaataaaagctcaccttcttg |
288 |
Q |
| |
|
||||| | ||||| | ||||||||| |||||||| |||||| |
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|
| T |
49426505 |
ttctttagaatatgttttgccaatagaagctcactttcttg |
49426545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 356
Target Start/End: Original strand, 17641093 - 17641275
Alignment:
| Q |
184 |
ataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gcaaaactcttgcattcttcacaatatatattgccaataaaagctcacc |
282 |
Q |
| |
|
|||| |||||||||| |||||| || ||||| |||| |||| ||||||| |||||||| |||||||||||| ||| | | ||||||||| |||||| || |
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|
| T |
17641093 |
ataactctctttctattttgaggtcttcactgcaatgtattttcatggtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgcc |
17641192 |
T |
|
| Q |
283 |
ttcttgcccta-aaagttca--------caagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaat |
356 |
Q |
| |
|
|||||| |||| ||||| | ||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||| |
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|
| T |
17641193 |
ttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatgaaaaacattgcggaacaaatattgggtccacccaat |
17641275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 49437751 - 49437871
Alignment:
| Q |
147 |
ataacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttcca-tggttgcaaaactcttg |
245 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||||||||| | || ||| | | | || | ||||| || || |||||||||||||| |
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|
| T |
49437751 |
ataacttcacatataggagagacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttg |
49437850 |
T |
|
| Q |
246 |
cattcttcacaatatatattg |
266 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
49437851 |
cattcttcagaatatatattg |
49437871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 347
Target Start/End: Complemental strand, 49416182 - 49415963
Alignment:
| Q |
143 |
aataataacttcacatgtaggagaggccc-----ttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gca |
236 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || ||| |||||||||| | | |||| | || || || |||| |||| ||||||| ||| |
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|
| T |
49416182 |
aataataatttcacatgtaggagaggcccggcccttgggcacaagagtaattctcttccgattttggggtcatcgctgcaatgtattttcatggtttgca |
49416083 |
T |
|
| Q |
237 |
aaactcttgcattcttcacaatatatattgccaataaaagctcaccttcttgccctaa-aagttca--------caagttttaagttgtgatggaaagca |
327 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||||||||| |||||| ||||||| ||||| ||||||| ||||||||||||||| ||| || | |
|
|
| T |
49416082 |
aaactctagcattcttcaaaatgtatcttgccaatagaagctcgccttcttcgcctaagaagttcagaagtttgcaagttttaagttgtaatgaaagact |
49415983 |
T |
|
| Q |
328 |
ttgtggaacaaatattgggt |
347 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49415982 |
ttgtggaacaaatattgggt |
49415963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 49432464 - 49432504
Alignment:
| Q |
10 |
atgaacaagttaaaataacagctctacaagtttaaggataa |
50 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
49432464 |
atgaacaagttaaaaaaacagctctacaaatttaaggataa |
49432504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 49432642 - 49432786
Alignment:
| Q |
145 |
taataacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggttg-caaaactct |
243 |
Q |
| |
|
|||||||||||||| ||||||| ||||| | |||||| ||| |||||| || || || || | || ||||| ||||| ||||||| ||||||||| |
|
|
| T |
49432642 |
taataacttcacatataggagaagccctatggcataagagtaactctcttaatatttcgaagtctttaccacaatggattttcatggtttacaaaactct |
49432741 |
T |
|
| Q |
244 |
tgcattcttcacaatatatattgccaataaaagctcaccttcttg |
288 |
Q |
| |
|
|| |||||| | ||||||| ||||||||| |||||||| |||||| |
|
|
| T |
49432742 |
tgaattctttagaatatatcttgccaatagaagctcactttcttg |
49432786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 49445344 - 49445394
Alignment:
| Q |
232 |
ttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcacc |
282 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| | ||||||||| |
|
|
| T |
49445344 |
ttgcaaaactcttgcattcttcaaaatatattttgccatcagaagctcacc |
49445394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 380 - 485
Target Start/End: Original strand, 48718284 - 48718389
Alignment:
| Q |
380 |
atcttatccgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcacgtgcacccaattccc |
479 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
48718284 |
atcttatgtgagaatgatgagaataaatcttaaccattaaatgaaaaatgcacggttgagattaaaacatcacattaaaagtcatttgcacccaattctc |
48718383 |
T |
|
| Q |
480 |
accctt |
485 |
Q |
| |
|
|||||| |
|
|
| T |
48718384 |
accctt |
48718389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 48718958 - 48718898
Alignment:
| Q |
407 |
tctcaaccattaaataaaaaat---gcacagtggagattaaaacatcacattaaaagtcac |
464 |
Q |
| |
|
|||||| ||||||||||||||| | || || |||||||||||||||||||||||||||| |
|
|
| T |
48718958 |
tctcaagcattaaataaaaaataatgtacggttgagattaaaacatcacattaaaagtcac |
48718898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 38367283 - 38367225
Alignment:
| Q |
406 |
atctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcac |
464 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
38367283 |
atcttaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcac |
38367225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 38366625 - 38366670
Alignment:
| Q |
409 |
tcaaccattaaataaaaaatgcacagtggagattaaaacatcacat |
454 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
38366625 |
tcaaccatcaaataaaaaatgcatggttgagattaaaacatcacat |
38366670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 1024755 - 1024808
Alignment:
| Q |
303 |
aagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaat |
356 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
1024755 |
aagttctaaggtgtgataaaaagcattgtggaacaaattctgggtccacccaat |
1024808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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