View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_35 (Length: 499)
Name: NF17763_low_35
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 201 - 483
Target Start/End: Original strand, 13728215 - 13728497
Alignment:
| Q |
201 |
agaatttatttcattgagcagcaaattagatttgcctgttgggtaactgcaatgtttcctataaatagattacttggcgtgtgacctttcaaagccaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13728215 |
agaatttatttcattgagcagcaaattagatttgcctgttgggtaactgcaatgtttcctataaatagattacttggcgtgtgacctttcaaagccaaaa |
13728314 |
T |
|
| Q |
301 |
gataacacatcaagttccttagtctattgggaaactttgattttgattttgattttgaaagcaaaattgatcaatatcccaaaatcacaattgacattgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13728315 |
gataacacatcaagttccttagtctattgggaaactttgattttgattttgattttgaaagcaaaattgatcaatatcccaaaatcacaattgacattgt |
13728414 |
T |
|
| Q |
401 |
tgatcaagattgatcttattacatccctctcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaat |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13728415 |
tgatcaagattgatcttattacatccctctcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaat |
13728497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 208 - 483
Target Start/End: Original strand, 13627806 - 13628083
Alignment:
| Q |
208 |
atttcattgagcagcaaattagatttgcctg-ttgggtaactgcaatgtttcctataaatagattact-tggcgtgtgacctttcaaagccaaaagataa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13627806 |
atttcattgagcagcaaattagatttgcctgcttgggtaactgcaatgtttcctataaatagattactatggcgtgtgacctttcaaagccaaaagataa |
13627905 |
T |
|
| Q |
306 |
cacatcaagttccttagtctattgggaaactttgattttgattttgattttgaaagcaaaattgatcaatatcccaaaatcacaattgacattgttgatc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13627906 |
cacatcaagttccttagtctattgggaaactttgattttgattttgattttgaaagcaaaattgatcaatatcccaaaatcacaattgacattgttgatc |
13628005 |
T |
|
| Q |
406 |
aagattgatcttattacatccctctcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13628006 |
aagattgatcttattacatccctctcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaat |
13628083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 13668818 - 13668911
Alignment:
| Q |
123 |
gtaacacaatttattaatttgattaatacttgttgtttgagaggattttcattggtagttgtaataataccttatactagaatttatttcattg |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13668818 |
gtaacacaatttattaatttcattaatacttgttgtttgagaggattttcattggtagttgtaataataccttatactagaatttatttgattg |
13668911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 13728093 - 13728186
Alignment:
| Q |
123 |
gtaacacaatttattaatttgattaatacttgttgtttgagaggattttcattggtagttgtaataataccttatactagaatttatttcattg |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13728093 |
gtaacacaatttattaatttcattaatacttgttgtttgagaggattttcattggtagttgtaataataccttatactagaatttatttgattg |
13728186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 13668705 - 13668787
Alignment:
| Q |
10 |
aagaatatgaaaaaagagtgatagtttcactaaatattaaaaatatgaggatcaaaattatatttggccaaaataaggtgacc |
92 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13668705 |
aagaaaatgaaaaaagagtgatagtttcactaaatattaaaaatatgaggatcaaaattatatttggccaaaataaggcgacc |
13668787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 13727980 - 13728062
Alignment:
| Q |
10 |
aagaatatgaaaaaagagtgatagtttcactaaatattaaaaatatgaggatcaaaattatatttggccaaaataaggtgacc |
92 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13727980 |
aagaaaatgaaaaaagagtgatagtttcactaaatattaaaaatatgaggatcaaaattatatttggccaaaataaggcgacc |
13728062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University