View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_36 (Length: 490)
Name: NF17763_low_36
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 17109517 - 17109967
Alignment:
| Q |
19 |
aaggaatgacctttatctcattctaataatattccatcaaagcttgattctttaaaagctcgcttattttggttagatggcagaggggaagatgatttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||| |
|
|
| T |
17109517 |
aaggaatgacctttatctcattctaataatattccatcaaagcttgattctttaaaagctcggttatcttggttagatggtagaggggaagatgatctgt |
17109616 |
T |
|
| Q |
119 |
tgtctccggttgatatagaggaaatacgtggtatcactcatgagattcactcattgtctcgtgttaatactataatttgttggcagcagtccaagttgct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109617 |
tgtctccggttgatatagaggaaatacgtggtatcactaatgagattcactcattgtctcgtgttaatactataatttgttggcagcagtccaagttgct |
17109716 |
T |
|
| Q |
219 |
ttggcttaaggaaggagatgcaaactct-aaaaatttccacatagtattatccggtcgttggagatgtaattccattgtctcatttgtggaggaccttca |
317 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| || ||||||| ||||| |||||||||||||||||| ||||||||| |||||| ||| |
|
|
| T |
17109717 |
-----------aaggcgatgcaaactctaaaaaatttccacacagaattatccagtcgtcggagatgtaattccattgcctcatttgtagaggacgatca |
17109805 |
T |
|
| Q |
318 |
tattgtagagggtgttcagccaattcggaatgccannnnnnngcatttttgtaatcaatttaaggctcatcggttgtagcggccatgtgtggggaatttg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109806 |
tattgtagagggtgttcagccaattcggaatgccatttttttgcattttcgtaatcaatttaaggctcatcggttgtagcggccatgtgtggggaatttg |
17109905 |
T |
|
| Q |
418 |
gctttcgagactttatcgcttgtggatgggggaggcttggttaaaccttttagatttgatga |
479 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17109906 |
gctttcaagactttatcgcttgtggatgggagaggcttggttaaaccttttagatttgatga |
17109967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 30741878 - 30742092
Alignment:
| Q |
18 |
gaaggaatgacctttatctcattctaataatattccatcaaagcttgattctttaaaagctcgcttattttggttagatggcagaggggaagatgatttg |
117 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
30741878 |
gaaggaatggcatttgtctcattctaataatattccataaaagcttgattctttaaaagctcggttatcttggttagatggcagaggtgaagatgatttg |
30741977 |
T |
|
| Q |
118 |
ttgtctccggttgatatagaggaaatacgtggtatcactcatgagattcactcattgtctcgtgttaatactataatttgttggcagcagtccaagttgc |
217 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
30741978 |
ttgtcgtcggttgaaatagaggaaatgtgtggtattactcaagagatgcactcattgtctcgagttaatactagcatttgttggcagcagtctaggttgc |
30742077 |
T |
|
| Q |
218 |
tttggcttaaggaag |
232 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
30742078 |
tttggcttcaggaag |
30742092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 17584986 - 17585184
Alignment:
| Q |
46 |
aatattccatcaaagcttgattctttaaaagctcgcttattttggttagatggcagaggggaagatgatttgttgtctccggttgatatagaggaaatac |
145 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||| ||| | ||| || |||| | |||||||||| |||||| ||||| ||||||||||| | |
|
|
| T |
17584986 |
aatattccagctaagcttgattctttaaaggctcggttaactgagttggacggcaaaagggaagatgacaagttgtcagaagttgagatagaggaaatgc |
17585085 |
T |
|
| Q |
146 |
gtggtatcactcatgagattcactcattgtctcgtgttaatactataatttgttggcagcagtccaagttgctttggcttaaggaaggagatgcaaactc |
245 |
Q |
| |
|
||| ||| ||||||||| |||| || || ||||||||||||| || ||||| |||||||| |||| ||| |||||||| ||||| || ||||||||||| |
|
|
| T |
17585086 |
gtg-tattactcatgagcttcattctttatctcgtgttaatattagcatttgctggcagcaatccaggttactttggctcaaggacggtgatgcaaactc |
17585184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 13862368 - 13862429
Alignment:
| Q |
172 |
ttgtctcgtgttaatactataatttgttggcagcagtccaagttgctttggcttaaggaagg |
233 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
13862368 |
ttgtctcgtattaatactagtatttgttggcaacagtccaggatgctttggcttaaggaagg |
13862429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University