View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_38 (Length: 486)
Name: NF17763_low_38
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 261 - 452
Target Start/End: Original strand, 48069545 - 48069736
Alignment:
| Q |
261 |
gaggcataagggagaagccttaatgactttttgagcacaaacccataagtaaaaaatgttgtagtattggttgattcataaacagcttgcctgatttaaa |
360 |
Q |
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| T |
48069545 |
gaggcataagggagaagccttaatgactttttgagcacaaacccataagtgaaaaatgttgtagtattggttgattcataaacagcttgcctgatttaaa |
48069644 |
T |
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| Q |
361 |
gtttataaaataattgaaacaattttgttttcttcatttatagaacaaataaaatgtgaaaaagaatcaagttgtaaaaagaacactcttat |
452 |
Q |
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| T |
48069645 |
gtttataaaataattgaaacaattttgttttcttcatttatagaacagataaaatgtgaaaaagaatcaagttgtaaaaagaacactcttat |
48069736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 48069231 - 48069390
Alignment:
| Q |
10 |
cggtggtactagaatcatatgctgccacgattatgaggatcaattttggagcattttttatttacctttctctttaatattaaaataataattaaaacaa |
109 |
Q |
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| T |
48069231 |
cggtggtactagaatcatatgctgccacgattatgaggatcaattttggagcattttttatttgcctttctctttaatattaaaataataattaaaacaa |
48069330 |
T |
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| Q |
110 |
gcctataaatagtaatgttcactnnnnnnnntatataatcttaatcatgacaattccaaa |
169 |
Q |
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| T |
48069331 |
gcctataaatagtaatgttcactaaaaaatatatataatattaatcatgacaattccaaa |
48069390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 48069418 - 48069485
Alignment:
| Q |
171 |
gacataaaagcattgtattacaatgcattcatggcatacttcagcattctaaccatatgctagtttct |
238 |
Q |
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| T |
48069418 |
gacataaaagcattgtattacaatgcattcatggcatacttcagcattctaaccatatgctagtttct |
48069485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 11740149 - 11740196
Alignment:
| Q |
49 |
tcaattttggagcattttttatttacctttctctttaatattaaaata |
96 |
Q |
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| T |
11740149 |
tcaattttggagcattttttatttgcttttatctttaatattaaaata |
11740196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 10396785 - 10396905
Alignment:
| Q |
1 |
tgcggttgacggtggtactagaatcatatgctgccacgattatgaggatcaattttggagcattttttatttacctttctctttaatattaaaataataa |
100 |
Q |
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| T |
10396785 |
tgcggttgacagtggtactagaatcatatgctgccacgattatgaggatcaattttggag-attttttattttcctttctctttaacattaaaataataa |
10396883 |
T |
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| Q |
101 |
ttaaaacaagcctataaatagt |
122 |
Q |
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| T |
10396884 |
ttaaaacaagcctgtaaatagt |
10396905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 8913823 - 8913885
Alignment:
| Q |
57 |
ggagcattttttatttacctttctctttaatattaaaataataattaaaacaagcctataaatagt |
122 |
Q |
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| T |
8913823 |
ggagcattttttatttgcctttatctttaatattaa---aataattaaaacaagcctataaatagt |
8913885 |
T |
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