View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_4 (Length: 712)
Name: NF17763_low_4
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_4 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 189 - 530
Target Start/End: Original strand, 2182794 - 2183134
Alignment:
| Q |
189 |
tcaatatctacttttctacgtaaatttatagttgtttcataagttattatacatgtgatcgtttaaataacacattatcattgatacaattattttgtct |
288 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
2182794 |
tcaatatctacttttttacgtaaatttatagttgtttcataagaaattatacata-gattgttcaaataacacattatcattgatacaattattttgtct |
2182892 |
T |
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| Q |
289 |
ttaataagatgtttggatgtgggccatttcagtctagtggtgtttgaaattgcgtggaagctagaaactaaagaaaacgaaggttgttttcacatctccc |
388 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2182893 |
ttaataagatgtttggatgtgggccattttagtctagtggtgtttgaaattgtgtgaaagctagaaactaaagaaaacgaaggttgttttcacatctccc |
2182992 |
T |
|
| Q |
389 |
tcaatgctacgacatttctctttttcttnnnnnnnttcaattattgaaagtattgtttaaagtattcattttaggagtgaccaagactgagtccaaccca |
488 |
Q |
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| T |
2182993 |
tcaatgctacgacatttctctttttcttaaaaaaattcaattattgaaagtattgtttaaagtattcattttaggagtgaccaagactgagtccaaccca |
2183092 |
T |
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| Q |
489 |
aagactccttcagacacagtaatttcgagttgcaaccaactt |
530 |
Q |
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| T |
2183093 |
aagactccttcagacacagtaatttcgagttgcaaccaactt |
2183134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 185 - 530
Target Start/End: Complemental strand, 2159274 - 2158928
Alignment:
| Q |
185 |
gttgtcaatatctacttttctacgtaaatttatagttgtttcataagttattatacatgtgatcgtttaaataacacattatc-attgatacaattattt |
283 |
Q |
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| T |
2159274 |
gttgtcaatatctatttttctttgtaaatttatggttgttccataagttatcatacacatgattgtttaaataacacattagatatatatacaattattt |
2159175 |
T |
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| Q |
284 |
tgtctttaataagatgtttggatgtgggccatttcagtctagtggtgtttgaaattgcgtggaagctagaaactaaagaaaacgaaggttgttttcacat |
383 |
Q |
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| T |
2159174 |
tgtctttaataagatgtttaaatgtgggccattttagtctagtggtgtttgaaattgcgtggaaaccagaaactaaagaaaaggaaggttggtttcacac |
2159075 |
T |
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| Q |
384 |
ctccctcaatgctacgacatttctctttttcttnnnnnnnttcaattattgaaagtattgtttaaagtattcattttaggagtgaccaagactgagtcca |
483 |
Q |
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| T |
2159074 |
ctccctcaatgctacaacatttct-tttttcttaaaaaaatttcattattgaaaatattgttttaagtattcattttaggagtatgcaagacttagtcca |
2158976 |
T |
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| Q |
484 |
a-cccaaagactccttcagacacagtaatttcgagttgcaaccaactt |
530 |
Q |
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| T |
2158975 |
accccaaagactccttcggacacaatagtgtcgacttgcaaccaactt |
2158928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 537 - 698
Target Start/End: Original strand, 2184089 - 2184250
Alignment:
| Q |
537 |
attctcatatctcatttctcatacctctattctcatggctatgccacaatcatcttcctcctcttcttcatcctcctccaaattcacctataacgtattc |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2184089 |
attctcatatctcatttctcatacctctattctcatggctatgccacaatcatcttcctcctcttcttcatcctcctccaaattcacctataacgtgttc |
2184188 |
T |
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| Q |
637 |
ctaagtttcagaggagttgacactcgccatggttttaccggcaatctttacgatgctctatg |
698 |
Q |
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| T |
2184189 |
ctaagtttcagaggagctgacactcgccatggttttaccggcaatctttacgatgctctatg |
2184250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 2182634 - 2182690
Alignment:
| Q |
14 |
agatgaatggtttgagacaatcttgaacatagaaataaataatattaaaatgaaaga |
70 |
Q |
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| T |
2182634 |
agatgaatggtttgagacaatcttggacatagaaataaataatattaaaatgaaaga |
2182690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 2184816 - 2184858
Alignment:
| Q |
654 |
tgacactcgccatggttttaccggcaatctttacgatgctcta |
696 |
Q |
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| T |
2184816 |
tgacattcgcgatggttttaccggcaatctttacgatgctcta |
2184858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 537 - 698
Target Start/End: Complemental strand, 237 - 76
Alignment:
| Q |
537 |
attctcatatctcatttctcatacctctattctcatggctatgccacaatcatcttcctcctcttcttcatcctcctccaaattcacctataacgtattc |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
237 |
attctcatatctcatttctcatacctctattctcatggctatgccacaatcatcttcctcctcttcttcatcctcctccaaattcacctataacgtgttc |
138 |
T |
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| Q |
637 |
ctaagtttcagaggagttgacactcgccatggttttaccggcaatctttacgatgctctatg |
698 |
Q |
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| T |
137 |
ctaagtttcagaggagctgacactcgccatggttttaccggcaatctttacgatgctctatg |
76 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 424 - 530
Target Start/End: Complemental strand, 1297 - 1191
Alignment:
| Q |
424 |
ttcaattattgaaagtattgtttaaagtattcattttaggagtgaccaagactgagtccaacccaaagactccttcagacacagtaatttcgagttgcaa |
523 |
Q |
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| T |
1297 |
ttcaattattgaaagtattgtttaaagtattcattttaggagtgaccaagactgagtccaacccaaagactccttcagacacagtaatttcgagttgcaa |
1198 |
T |
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| Q |
524 |
ccaactt |
530 |
Q |
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||||||| |
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| T |
1197 |
ccaactt |
1191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 42075327 - 42075281
Alignment:
| Q |
187 |
tgtcaatatctacttttctacgtaaatttatagttgtttcataagtt |
233 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| || ||||| |
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| T |
42075327 |
tgtcaatacctacttttctatgtaaatttatagttgttccaaaagtt |
42075281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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